Competition between histone and transcription factor binding regulates the onset of transcription in zebrafish embryos

Transcriptional Regulators Compete with Nucleosomes Post-replication

(2016) Srinivas Ramachandran et al.   CELL

Quantitative Single-Embryo Profile of Drosophila Genome Activation and the Dorsal-Ventral Patterning Network

(2016) J. E. Sandler et al.   GENETICS

Establishment of a promoter-based chromatin architecture on recently replicated DNA can accommodate variable inter-nucleosome spacing

(2016) Ross T. Fennessy et al.   NUCLEIC ACIDS RESEARCH

Dynamics of Nucleosome Positioning Maturation following Genomic Replication

(2016) Pauline Vasseur et al.   Cell Reports

Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development

(2016) Nick D.L. Owens et al.   Cell Reports

Using Light Sheet Fluorescence Microscopy to Image Zebrafish Eye Development

(2016) Jaroslav Icha et al.   Jove-Journal of Visualized Experiments

Zygotic Genome Activation Triggers the DNA Replication Checkpoint at the Midblastula Transition

(2015) Shelby A. Blythe et al.   CELL

Nuclear Size Scaling during Xenopus Early Development Contributes to Midblastula Transition Timing

(2015) Predrag Jevtić et al.   CURRENT BIOLOGY

Interkinetic Nuclear Migration Is Centrosome Independent and Ensures Apical Cell Division to Maintain Tissue Integrity

(2015) Paulina J. Strzyz et al.   DEVELOPMENTAL CELL

The histone chaperone CAF-1 safeguards somatic cell identity

(2015) Sihem Cheloufi et al.   NATURE

Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly

(2015) Takashi Ishiuchi et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Histone titration against the genome sets the DNA-to-cytoplasm threshold for theXenopusmidblastula transition

(2015) Amanda A. Amodeo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly

(2015) Takashi Ishiuchi et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Zygotic Genome Activation During the Maternal-to-Zygotic Transition

(2014) Miler T. Lee et al.   Annual Review of Cell and Developmental Biology

Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells

(2014) Jiji Chen et al.   CELL

Zelda Potentiates Morphogen Activity by Increasing Chromatin Accessibility

(2014) Sun Melody Foo et al.   CURRENT BIOLOGY

High-resolution analysis of gene activity during the Xenopus mid-blastula transition

(2014) Clara Collart et al.   DEVELOPMENT

Nucleosome loss leads to global transcriptional up-regulation and genomic instability during yeast aging

(2014) Z. Hu et al.   GENES & DEVELOPMENT

Quantifying histone and RNA polymerase II post-translational modification dynamics in mother and daughter cells

(2014) Timothy J. Stasevich et al.   METHODS

Systematic evaluation of quantotypic peptides for targeted analysis of the human kinome

(2014) Jonathan D Worboys et al.   NATURE METHODS

Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals

(2014) Evan J Olson et al.   NATURE METHODS

Protective effect of the long pentraxin PTX3 against histone-mediated endothelial cell cytotoxicity in sepsis

(2014) K. Daigo et al.   Science Signaling

The Earliest Transcribed Zygotic Genes Are Short, Newly Evolved, and Different across Species

(2014) Patricia Heyn et al.   Cell Reports

Histone content increases in differentiating embryonic stem cells

(2014) Theodoros Karnavas et al.   Frontiers in Physiology

Enzymatically Driven Transport: A Kinetic Theory for Nuclear Export

(2013) Sanghyun Kim et al.   BIOPHYSICAL JOURNAL

A Simple Kinetic Model with Explicit Predictions for Nuclear Transport

(2013) Sanghyun Kim et al.   BIOPHYSICAL JOURNAL

Identification of the zebrafish maternal and paternal transcriptomes

(2013) Steven A. Harvey et al.   DEVELOPMENT

The Embryonic Linker Histone H1 Variant of Drosophila, dBigH1, Regulates Zygotic Genome Activation

(2013) Salvador Pérez-Montero et al.   DEVELOPMENTAL CELL

Canonical nucleosome organization at promoters forms during genome activation

(2013) Y. Zhang et al.   GENOME RESEARCH

Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition

(2013) Miler T. Lee et al.   NATURE

Titration of Four Replication Factors Is Essential for the Xenopus laevis Midblastula Transition

(2013) C. Collart et al.   SCIENCE

Pou5f1 Transcription Factor Controls Zygotic Gene Activation In Vertebrates

(2013) M. Leichsenring et al.   SCIENCE

Facilitators and Impediments of the Pluripotency Reprogramming Factors' Initial Engagement with the Genome

(2012) Abdenour Soufi et al.   CELL

Lipid Droplets Control the Maternal Histone Supply of Drosophila Embryos

(2012) Zhihuan Li et al.   CURRENT BIOLOGY

RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development

(2012) M. H. Tan et al.   GENOME RESEARCH

Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast

(2012) Tali Raveh-Sadka et al.   NATURE GENETICS

An essential role for transcription before the MBT in Xenopus laevis

(2011) Jennifer Skirkanich et al.   DEVELOPMENTAL BIOLOGY

Pou5f1 contributes to dorsoventral patterning by positive regulation of vox and modulation of fgf8a expression

(2011) Heinz-Georg Belting et al.   DEVELOPMENTAL BIOLOGY

Prepatterning of Developmental Gene Expression by Modified Histones before Zygotic Genome Activation

(2011) Leif C. Lindeman et al.   DEVELOPMENTAL CELL

Pioneer transcription factors: establishing competence for gene expression

(2011) K. S. Zaret et al.   GENES & DEVELOPMENT

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

(2011) A. Pauli et al.   GENOME RESEARCH

Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition

(2011) Håvard Aanes et al.   GENOME RESEARCH

Noncanonical Compensation of Zygotic X Transcription in Early Drosophila melanogaster Development Revealed through Single-Embryo RNA-Seq

(2011) Susan E. Lott et al.   PLOS BIOLOGY

Temporal Coordination of Gene Networks by Zelda in the Early Drosophila Embryo

(2011) Chung-Yi Nien et al.   PLoS Genetics

Zelda Binding in the Early Drosophila melanogaster Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition

(2011) Melissa M. Harrison et al.   PLoS Genetics

Grainyhead and Zelda compete for binding to the promoters of the earliest-expressed Drosophila genes

(2010) Melissa M. Harrison et al.   DEVELOPMENTAL BIOLOGY

Elevated Histone Expression Promotes Life Span Extension

(2010) Jason Feser et al.   MOLECULAR CELL

Zebrafish Pou5f1-dependent transcriptional networks in temporal control of early development

(2010) Daria Onichtchouk et al.   Molecular Systems Biology

Chromatin signature of embryonic pluripotency is established during genome activation

(2010) Nadine L. Vastenhouw et al.   NATURE

Reduced histone biosynthesis and chromatin changes arising from a damage signal at telomeres

(2010) Roderick J O'Sullivan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Nucleosome-mediated cooperativity between transcription factors

(2010) L. A. Mirny   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

B1 SOX Coordinate Cell Specification with Patterning and Morphogenesis in the Early Zebrafish Embryo

(2010) Yuichi Okuda et al.   PLoS Genetics

An Integrated View of Humoral Innate Immunity: Pentraxins as a Paradigm

(2009) Barbara Bottazzi et al.   Annual Review of Immunology

Coupling of zygotic transcription to mitotic control at the Drosophila mid-blastula transition

(2009) X. Lu et al.   DEVELOPMENT

The maternal-to-zygotic transition: a play in two acts

(2009) W. Tadros et al.   DEVELOPMENT

Nucleocytoplasmic transport: A thermodynamic mechanism

(2009) Ronen Benjamine Kopito et al.   HFSP Journal

Analysis of Histones inXenopus laevis

(2008) David Shechter et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila

(2008) Hsiao-Lan Liang et al.   NATURE

Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

(2008) P. J. Keller et al.   SCIENCE