Establishment of a promoter-based chromatin architecture on recently replicated DNA can accommodate variable inter-nucleosome spacing

Nucleosome repositioning underlies dynamic gene expression

(2016) Nicolas Nocetti et al.   GENES & DEVELOPMENT

The ISW1 and CHD1 ATP-dependent chromatin remodelers compete to set nucleosome spacingin vivo

(2016) Josefina Ocampo et al.   NUCLEIC ACIDS RESEARCH

Nucleosome architecture throughout the cell cycle

(2016) Özgen Deniz et al.   Scientific Reports

Two distinct modes for propagation of histone PTMs across the cell cycle

(2015) Constance Alabert et al.   GENES & DEVELOPMENT

Nucleosome Spacing Generated by ISWI and CHD1 Remodelers Is Constant Regardless of Nucleosome Density

(2015) Corinna Lieleg et al.   MOLECULAR AND CELLULAR BIOLOGY

Cell-Cycle Analyses Using Thymidine Analogues in Fission Yeast

(2014) Silje Anda et al.   PLoS One

Mechanisms and Functions of ATP-Dependent Chromatin-Remodeling Enzymes

(2013) Geeta J. Narlikar et al.   CELL

ATR-like kinase Mec1 facilitates both chromatin accessibility at DNA replication forks and replication fork progression during replication stress

(2013) J. Rodriguez et al.   GENES & DEVELOPMENT

Stochastic association of neighboring replicons creates replication factories in budding yeast

(2013) Nazan Saner et al.   JOURNAL OF CELL BIOLOGY

Toward a unified physical model of nucleosome patterns flanking transcription start sites

(2013) W. Mobius et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Resolution Replication Profiles Define the Stochastic Nature of Genome Replication Initiation and Termination

(2013) Michelle Hawkins et al.   Cell Reports

A Compendium of Nucleosome and Transcript Profiles Reveals Determinants of Chromatin Architecture and Transcription

(2013) Harm van Bakel et al.   PLoS Genetics

CHD1 remodelers regulate nucleosome spacingin vitroand align nucleosomal arrays over gene coding regions inS. pombe

(2012) Julia Pointner et al.   EMBO JOURNAL

Chd1 chromatin remodelers maintain nucleosome organization and repress cryptic transcription

(2012) Bianca P Hennig et al.   EMBO REPORTS

Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules

(2012) A. J. Faure et al.   GENOME RESEARCH

Origins and Formation of Histone Methylation across the Human Cell Cycle

(2012) B. M. Zee et al.   MOLECULAR AND CELLULAR BIOLOGY

A Functional Evolutionary Approach to Identify Determinants of Nucleosome Positioning: A Unifying Model for Establishing the Genome-wide Pattern

(2012) Amanda L. Hughes et al.   MOLECULAR CELL

Intrinsic coupling of lagging-strand synthesis to chromatin assembly

(2012) Duncan J. Smith et al.   NATURE

Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast

(2012) Tali Raveh-Sadka et al.   NATURE GENETICS

Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange

(2012) Michaela Smolle et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Integrative annotation of chromatin elements from ENCODE data

(2012) Michael M. Hoffman et al.   NUCLEIC ACIDS RESEARCH

In Vivo Effects of Histone H3 Depletion on Nucleosome Occupancy and Position in Saccharomyces cerevisiae

(2012) Andrea J. Gossett et al.   PLoS Genetics

Assembling chromatin: The long and winding road

(2011) Anthony T. Annunziato   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

A model for mitotic inheritance of histone lysine methylation

(2011) Mo Xu et al.   EMBO REPORTS

Identification of a Rapidly Formed Nonnucleosomal Histone-DNA Intermediate that Is Converted into Chromatin by ACF

(2011) Sharon E. Torigoe et al.   MOLECULAR CELL

Tup1 stabilizes promoter nucleosome positioning and occupancy at transcriptionally plastic genes

(2011) Jason M. Rizzo et al.   NUCLEIC ACIDS RESEARCH

Monitoring DNA replication in fission yeast by incorporation of 5-ethynyl-2′-deoxyuridine

(2011) Hui Hua et al.   NUCLEIC ACIDS RESEARCH

A Role for Snf2-Related Nucleosome-Spacing Enzymes in Genome-Wide Nucleosome Organization

(2011) T. Gkikopoulos et al.   SCIENCE

A Packing Mechanism for Nucleosome Organization Reconstituted Across a Eukaryotic Genome

(2011) Z. Zhang et al.   SCIENCE

Substantial Histone Reduction Modulates Genomewide Nucleosomal Occupancy and Global Transcriptional Output

(2011) Barbara Celona et al.   PLOS BIOLOGY

Histone H3K56 Acetylation, CAF1, and Rtt106 Coordinate Nucleosome Assembly and Stability of Advancing Replication Forks

(2011) Marta Clemente-Ruiz et al.   PLoS Genetics

Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells

(2010) Guillaume J. Filion et al.   CELL

Overlapping Regulation of CenH3 Localization and Histone H3 Turnover by CAF-1 and HIR Proteins in Saccharomyces cerevisiae

(2010) J. L. d. Rosa et al.   GENETICS

Mathematical modelling of whole chromosome replication

(2010) Alessandro P. S. de Moura et al.   NUCLEIC ACIDS RESEARCH

A Complete Set of Nascent Transcription Rates for Yeast Genes

(2010) Vicent Pelechano et al.   PLoS One

Diversity of Eukaryotic DNA Replication Origins Revealed by Genome-Wide Analysis of Chromatin Structure

(2010) Nicolas M. Berbenetz et al.   PLoS Genetics

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

(2009) J. W. Nicol et al.   BIOINFORMATICS

High-resolution nucleosome mapping reveals transcription-dependent promoter packaging

(2009) A. Weiner et al.   GENOME RESEARCH

The Fission Yeast HIRA Histone Chaperone Is Required for Promoter Silencing and the Suppression of Cryptic Antisense Transcripts

(2009) H. E. Anderson et al.   MOLECULAR AND CELLULAR BIOLOGY

Dynamics of nucleosome remodelling by individual ACF complexes

(2009) Timothy R. Blosser et al.   NATURE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

(2008) T. N. Mavrich et al.   GENOME RESEARCH

A chemical method for fast and sensitive detection of DNA synthesis in vivo

(2008) A. Salic et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromatin- and Transcription-Related Factors Repress Transcription from within Coding Regions throughout the Saccharomyces cerevisiae Genome

(2008) Vanessa Cheung et al.   PLOS BIOLOGY