Fine scale mapping of genomic introgressions within the Drosophila yakuba clade

The ability ofDrosophilahybrids to locate food declines with parental divergence

(2017) David A. Turissini et al.   EVOLUTION

A rhodopsin in the brain functions in circadian photoentrainment in Drosophila

(2017) Jinfei D. Ni et al.   NATURE

A genome-wide assessment of stages of elevational parapatry in Bornean passerine birds reveals no introgression: implications for processes and patterns of speciation

(2017) Robert G. Moyle et al.   PeerJ

Genomic Signatures of Selective Pressures and Introgression from Archaic Hominins at Human Innate Immunity Genes

(2016) Matthieu Deschamps et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Hybrid Incompatibilities, Local Adaptation, and the Genomic Distribution of Natural Introgression between Species

(2016) Christina A. Muirhead et al.   AMERICAN NATURALIST

Genomic approaches to understanding population divergence and speciation in birds

(2016) David P. L. Toews et al.   AUK

SELAM: simulation of epistasis and local adaptation during admixture with mate choice

(2016) Russell Corbett-Detig et al.   BIOINFORMATICS

The Combined Landscape of Denisovan and Neanderthal Ancestry in Present-Day Humans

(2016) Sriram Sankararaman et al.   CURRENT BIOLOGY

Integrating the signatures of demic expansion and archaic introgression in studies of human population genomics

(2016) Lauren Alpert Sugden et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Wolbachia in the Drosophila yakuba Complex: Pervasive Frequency Variation and Weak Cytoplasmic Incompatibility, but No Apparent Effect on Reproductive Isolation

(2016) Brandon S. Cooper et al.   GENETICS

Differential introgression and reorganization of retrotransposons in hybrid zones between wild wheats

(2016) Natacha Senerchia et al.   MOLECULAR ECOLOGY

Powerful methods for detecting introgressed regions from population genomic data

(2016) Benjamin K. Rosenzweig et al.   MOLECULAR ECOLOGY

Heterogeneous genome divergence, differential introgression, and the origin and structure of hybrid zones

(2016) Richard G. Harrison et al.   MOLECULAR ECOLOGY

Genomics of hybridization and its evolutionary consequences

(2016) Richard J. Abbott et al.   MOLECULAR ECOLOGY

Recurrent specialization on a toxic fruit in an islandDrosophilapopulation

(2016) Amir Yassin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correlated evolution of male and female reproductive traits drive a cascading effect of reinforcement inDrosophila yakuba

(2016) Aaron A. Comeault et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals

(2016) B. Vernot et al.   SCIENCE

The Strength of Selection against Neanderthal Introgression

(2016) Ivan Juric et al.   PLoS Genetics

Wolbachia in the Drosophila yakuba Complex: Pervasive Frequency Variation and Weak Cytoplasmic Incompatibility, but No Apparent Effect on Reproductive Isolation

(2016) Brandon S. Cooper et al.   GENETICS

Noisy Neighbors Can Hamper the Evolution of Reproductive Isolation by Reinforcing Selection

(2015) Daniel R. Matute   AMERICAN NATURALIST

Polymorphisms in early neurodevelopmental genes affect natural variation in alcohol sensitivity in adult drosophila

(2015) Tatiana V. Morozova et al.   BMC GENOMICS

Identification and functional analysis of early gene expression induced by circadian light-resetting in Drosophila

(2015) Adeolu B. Adewoye et al.   BMC GENOMICS

Footprints of ancient-balanced polymorphisms in genetic variation data from closely related species

(2015) Ziyue Gao et al.   EVOLUTION

Gene flow betweenDrosophila yakubaandDrosophila santomeain subunit V of cytochromecoxidase: A potential case of cytonuclear cointrogression

(2015) Emily A. Beck et al.   EVOLUTION

The evolution of reproductive isolation in theDrosophila yakubacomplex of species

(2015) D. A. Turissini et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Local interspecies introgression is the main cause of extreme levels of intraspecific differentiation in mussels

(2015) Christelle Fraïsse et al.   MOLECULAR ECOLOGY

Evidence for archaic adaptive introgression in humans

(2015) Fernando Racimo et al.   NATURE REVIEWS GENETICS

Reproductive Isolation of Hybrid Populations Driven by Genetic Incompatibilities

(2015) Molly Schumer et al.   PLoS Genetics

Recent Selective Sweeps in North American Drosophila melanogaster Show Signatures of Soft Sweeps

(2015) Nandita R. Garud et al.   PLoS Genetics

Gene-Flow in a Mosaic Hybrid Zone: Is Local Introgression Adaptive?

(2014) C. Fraisse et al.   GENETICS

Detecting Structure of Haplotypes and Local Ancestry

(2014) Y. Guan   GENETICS

The Lengths of Admixture Tracts

(2014) M. Liang et al.   GENETICS

Hybridization occurs betweenDrosophila simulansandD. sechelliain the Seychelles archipelago

(2014) D. R. Matute et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Adaptive gene introgression after secondary contact

(2014) Hildegard Uecker et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci

(2014) Simon H. Martin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Landscape of Standing Variation for Tandem Duplications in Drosophila yakuba and Drosophila simulans

(2014) Rebekah L. Rogers et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sequential adaptive introgression of the mitochondrial genome inDrosophila yakubaandDrosophila santomea

(2014) Ana Llopart et al.   MOLECULAR ECOLOGY

The genomic landscape of Neanderthal ancestry in present-day humans

(2014) Sriram Sankararaman et al.   NATURE

A Genetic Atlas of Human Admixture History

(2014) G. Hellenthal et al.   SCIENCE

Extensive introgression in a malaria vector species complex revealed by phylogenomics

(2014) M. C. Fontaine et al.   SCIENCE

The magnitude of behavioral isolation is affected by characteristics of the mating community

(2014) Daniel R. Matute   Ecology and Evolution

The Genomic Architecture of Population Divergence between Subspecies of the European Rabbit

(2014) Miguel Carneiro et al.   PLoS Genetics

High-resolution mapping reveals hundreds of genetic incompatibilities in hybridizing fish species

(2014) Molly Schumer et al.   eLife

Genome-wide association mapping of natural variation in odour-guided behaviour inDrosophila

(2013) E. B. Brown et al.   GENES BRAIN AND BEHAVIOR

Inferring Admixture Histories of Human Populations Using Linkage Disequilibrium

(2013) P.-R. Loh et al.   GENETICS

Genome-wide evidence for speciation with gene flow inHeliconiusbutterflies

(2013) Simon H. Martin et al.   GENOME RESEARCH

Admixture mapping of quantitative traits in Populus hybrid zones: power and limitations

(2013) D Lindtke et al.   HEREDITY

Does hybridization influence speciation?

(2013) N. H. Barton   JOURNAL OF EVOLUTIONARY BIOLOGY

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation

(2013) Philip W. Hedrick   MOLECULAR ECOLOGY

The complete genome sequence of a Neanderthal from the Altai Mountains

(2013) Kay Prüfer et al.   NATURE

Female contact modulates male aggression via a sexually dimorphic GABAergic circuit in Drosophila

(2013) Quan Yuan et al.   NATURE NEUROSCIENCE

Introgression and Phenotypic Assimilation in Zimmerius Flycatchers (Tyrannidae): Population Genetic and Phylogenetic Inferences from Genome-Wide SNPs

(2013) Frank E. Rheindt et al.   SYSTEMATIC BIOLOGY

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

(2013) Deren A. R. Eaton et al.   SYSTEMATIC BIOLOGY

Inferring Demographic History from a Spectrum of Shared Haplotype Lengths

(2013) Kelley Harris et al.   PLoS Genetics

Contact Chemoreceptors Mediate Male-Male Repulsion and Male-Female Attraction during Drosophila Courtship

(2012) Robert Thistle et al.   CELL

Population Genetics Models of Local Ancestry

(2012) S. Gravel   GENETICS

Genomic Variation in Natural Populations of Drosophila melanogaster

(2012) C. H. Langley et al.   GENETICS

Genome sequencing reveals complex speciation in the Drosophila simulans clade

(2012) D. Garrigan et al.   GENOME RESEARCH

The Rapid Evolution of X-linked Male-Biased Gene Expression and the Large-X Effect in Drosophila yakuba, D. santomea, and Their Hybrids

(2012) Ana Llopart   MOLECULAR BIOLOGY AND EVOLUTION

The Many Landscapes of Recombination in Drosophila melanogaster

(2012) Josep M. Comeron et al.   PLoS Genetics

Population Genomics of Sub-Saharan Drosophila melanogaster: African Diversity and Non-African Admixture

(2012) John E. Pool et al.   PLoS Genetics

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Inference of Population Structure using Dense Haplotype Data

(2012) Daniel John Lawson et al.   PLoS Genetics

Genetic Introgression: An Integral but neglected component of speciation in birds

(2011) Frank E. Rheindt et al.   AUK

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Reinforcement Can Overcome Gene Flow during Speciation in Drosophila

(2010) Daniel R. Matute   CURRENT BIOLOGY

SPECIATION IN THE EUROPEAN RABBIT (ORYCTOLAGUS CUNICULUS): ISLANDS OF DIFFERENTIATION ON THE X CHROMOSOME AND AUTOSOMES

(2010) Miguel Carneiro et al.   EVOLUTION

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting

(2009) Simon Joly et al.   AMERICAN NATURALIST

The Role of Hybridization in Plant Speciation

(2009) Pamela S. Soltis et al.   Annual Review of Plant Biology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

INTRINSIC REPRODUCTIVE ISOLATION BETWEEN TWO SISTER SPECIES OF DROSOPHILA

(2009) Daniel R. Matute et al.   EVOLUTION

The Genomics of Speciation in Drosophila: Diversity, Divergence, and Introgression Estimated Using Low-Coverage Genome Sequencing

(2009) Rob J. Kulathinal et al.   PLoS Genetics

Sensitive Detection of Chromosomal Segments of Distinct Ancestry in Admixed Populations

(2009) Alkes L. Price et al.   PLoS Genetics

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

TEMPERATURE-BASED EXTRINSIC REPRODUCTIVE ISOLATION IN TWO SPECIES OFDROSOPHILA

(2008) Daniel R. Matute et al.   EVOLUTION

Inference of Historical Changes in Migration Rate From the Lengths of Migrant Tracts

(2008) J. E. Pool et al.   GENETICS

Speciation with gene flow could be common

(2008) PATRIK NOSIL   MOLECULAR ECOLOGY

Introduction. Extent, processes and evolutionary impact of interspecific hybridization in animals

(2008) K. Schwenk et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Sex chromosomes and speciation in Drosophila

(2008) Daven C. Presgraves   TRENDS IN GENETICS

Divergence between Drosophila santomea and allopatric or sympatric populations of D. yakuba using paralogous amylase genes and migration scenarios along the Cameroon volcanic line

(2003) M.-L. Cariou et al.   MOLECULAR ECOLOGY