Heterogeneous genome divergence, differential introgression, and the origin and structure of hybrid zones

Hybrid Incompatibilities, Local Adaptation, and the Genomic Distribution of Natural Introgression between Species

(2016) Christina A. Muirhead et al.   AMERICAN NATURALIST

The large-X effect in plants: increased species divergence and reduced gene flow on theSileneX-chromosome

(2016) Xin-Sheng Hu et al.   MOLECULAR ECOLOGY

The geography of introgression in a patchy environment and the thorn in the side of ecological speciation

(2016) Nicolas Bierne et al.   Current Zoology

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum ofFicedulaflycatchers

(2015) Reto Burri et al.   GENOME RESEARCH

On the occurrence of false positives in tests of migration under an isolation-with-migration model

(2015) Jody Hey et al.   MOLECULAR ECOLOGY

Genes with Restricted Introgression in a Field Cricket ( Gryllus firmus/Gryllus pennsylvanicus ) Hybrid Zone Are Concentrated on the X Chromosome and a Single Autosome

(2015) Luana S. Maroja et al.   G3-Genes Genomes Genetics

Spatiotemporally consistent genomic signatures of reproductive isolation in a moving hybrid zone

(2014) Scott A. Taylor et al.   EVOLUTION

Hybridization, Introgression, and the Nature of Species Boundaries

(2014) Richard G. Harrison et al.   JOURNAL OF HEREDITY

Do the same genes underlie parallel phenotypic divergence in differentLittorina saxatilispopulations?

(2014) A. M. Westram et al.   MOLECULAR ECOLOGY

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

The genomic landscape of Neanderthal ancestry in present-day humans

(2014) Sriram Sankararaman et al.   NATURE

Stick Insect Genomes Reveal Natural Selection's Role in Parallel Speciation

(2014) V. Soria-Carrasco et al.   SCIENCE

Geographic Mode of Speciation and Genomic Divergence

(2013) Jeffrey L. Feder et al.   Annual Review of Ecology Evolution and Systematics

PARALLEL EVOLUTION OF LOCAL ADAPTATION AND REPRODUCTIVE ISOLATION IN THE FACE OF GENE FLOW

(2013) Roger K. Butlin et al.   EVOLUTION

DIFFERENTIAL INTROGRESSION IN A MOSAIC HYBRID ZONE REVEALS CANDIDATE BARRIER GENES

(2013) Erica L. Larson et al.   EVOLUTION

THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION-WITH-GENE-FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING

(2013) Pierre-Alexandre Gagnaire et al.   EVOLUTION

The genomic consequences of adaptive divergence and reproductive isolation between species of manakins

(2013) T. L. Parchman et al.   MOLECULAR ECOLOGY

Parallel and nonparallel genome-wide divergence among replicate population pairs of freshwater and anadromous Atlantic salmon

(2013) Charles Perrier et al.   MOLECULAR ECOLOGY

Pervasive selection or is it…? why areFSToutliers sometimes so frequent?

(2013) Nicolas Bierne et al.   MOLECULAR ECOLOGY

Steep clines within a highly permeable genome across a hybrid zone between two subspecies of the European rabbit

(2013) Miguel Carneiro et al.   MOLECULAR ECOLOGY

Gene flow and the maintenance of species boundaries

(2013) Erica L. Larson et al.   MOLECULAR ECOLOGY

Structure of a mosaic hybrid zone between the field cricketsGryllus firmusandG. pennsylvanicus

(2013) Erica L. Larson et al.   Ecology and Evolution

THE LANGUAGE OF SPECIATION

(2012) Richard G. Harrison   EVOLUTION

GENOMIC REGIONS WITH A HISTORY OF DIVERGENT SELECTION AFFECT FITNESS OF HYBRIDS BETWEEN TWO BUTTERFLY SPECIES

(2012) Zachariah Gompert et al.   EVOLUTION

Patterns of Transcriptome Divergence in the Male Accessory Gland of Two Closely Related Species of Field Crickets

(2012) J. A. Andres et al.   GENETICS

Genome sequencing reveals complex speciation in the Drosophila simulans clade

(2012) D. Garrigan et al.   GENOME RESEARCH

Genomic scan for single nucleotide polymorphisms reveals patterns of divergence and gene flow between ecologically divergent species

(2012) Kai N. Stölting et al.   MOLECULAR ECOLOGY

Genomic and phenotypic architecture of a spruce hybrid zone (Picea sitchensis × P. glauca)

(2012) Jill A. Hamilton et al.   MOLECULAR ECOLOGY

Genome-wide architecture of reproductive isolation in a naturally occurring hybrid zone betweenMus musculus musculusandM. m. domesticus

(2012) VÁCLAV JANOUŠEK et al.   MOLECULAR ECOLOGY

Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs

(2012) MARIUS ROESTI et al.   MOLECULAR ECOLOGY

Differential introgression reveals candidate genes for selection across a spruce (Picea sitchensis × P. glauca) hybrid zone

(2012) Jill A. Hamilton et al.   NEW PHYTOLOGIST

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

(2011) Sam Yeaman et al.   EVOLUTION

Ecological and genetic assessment of spatial structure among replicate contact zones between two topminnow species

(2011) Jacob F. Schaefer et al.   EVOLUTIONARY ECOLOGY

Quaternary phylogeography: the roots of hybrid zones

(2011) Godfrey M. Hewitt   GENETICA

Higher differentiation among subspecies of the house mouse (Mus musculus) in genomic regions with low recombination

(2011) A. GERALDES et al.   MOLECULAR ECOLOGY

The coupling hypothesis: why genome scans may fail to map local adaptation genes

(2011) NICOLAS BIERNE et al.   MOLECULAR ECOLOGY

Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice

(2011) M. W. Nachman et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Divergence with Gene Flow: Models and Data

(2010) Catarina Pinho et al.   Annual Review of Ecology Evolution and Systematics

SPECIATION IN THE EUROPEAN RABBIT (ORYCTOLAGUS CUNICULUS): ISLANDS OF DIFFERENTIATION ON THE X CHROMOSOME AND AUTOSOMES

(2010) Miguel Carneiro et al.   EVOLUTION

Introgressive hybridization between two Iberian endemic cyprinid fish: a comparison between two independent hybrid zones

(2010) M. A. ABOIM et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Replicated hybrid zones of Xiphophorus swordtails along an elevational gradient

(2010) Z. W. CULUMBER et al.   MOLECULAR ECOLOGY

Using differential introgression in hybrid zones to identify genomic regions involved in speciation

(2010) BRET A. PAYSEUR   Molecular Ecology Resources

Repeated evolution of reproductive isolation in a marine snail: unveiling mechanisms of speciation

(2010) K. Johannesson et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Widespread genomic divergence during sympatric speciation

(2010) A. P. Michel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

THE EVOLUTION OF STRONG REPRODUCTIVE ISOLATION

(2009) Nicholas H. Barton et al.   EVOLUTION

GENEALOGICAL DISCORDANCE AND PATTERNS OF INTROGRESSION AND SELECTION ACROSS A CRICKET HYBRID ZONE

(2009) Luana S. Maroja et al.   EVOLUTION

THE VARIABLE GENOMIC ARCHITECTURE OF ISOLATION BETWEEN HYBRIDIZING SPECIES OF HOUSE MICE

(2009) Katherine C. Teeter et al.   EVOLUTION

Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species

(2009) M A F Noor et al.   HEREDITY

Pattern, process and geographic modes of speciation

(2009) B. M. FITZPATRICK et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Space, sympatry and speciation

(2009) J. MALLET et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Isolation with Migration Models for More Than Two Populations

(2009) Jody Hey   MOLECULAR BIOLOGY AND EVOLUTION

Variable patterns of introgression in two sculpin hybrid zones suggest that genomic isolation differs among populations

(2009) A. W. NOLTE et al.   MOLECULAR ECOLOGY

Divergent selection and heterogeneous genomic divergence

(2009) PATRIK NOSIL et al.   MOLECULAR ECOLOGY

A continuum of genetic divergence from sympatric host races to species in the pea aphid complex

(2009) J. Peccoud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MOLECULAR DEMOGRAPHIC HISTORY OF THE ANNUAL SUNFLOWERSHELIANTHUS ANNUUSANDH. PETIOLARIS-LARGE EFFECTIVE POPULATION SIZES AND RATES OF LONG-TERM GENE FLOW

(2008) Jared L. Strasburg et al.   EVOLUTION

What, if anything, is sympatric speciation?

(2008) B. M. FITZPATRICK et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Inferring the history of speciation in house mice from autosomal, X-linked, Y-linked and mitochondrial genes

(2008) ARMANDO GERALDES et al.   MOLECULAR ECOLOGY

Sympatric, parapatric or allopatric: the most important way to classify speciation?

(2008) R. K Butlin et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Speciation, hybrid zones and phylogeography - or seeing genes in space and time

(2003) Godfrey M. Hewitt   MOLECULAR ECOLOGY