Population genetic analysis of the DARC locus (Duffy) reveals adaptation from standing variation associated with malaria resistance in humans
出版年份 2017 全文链接
标题
Population genetic analysis of the DARC locus (Duffy) reveals adaptation from standing variation associated with malaria resistance in humans
作者
关键词
Haplotypes, Africa, Plasmodium, Genomics statistics, Human genomics, Paleogenetics, Parasite evolution, Malaria
出版物
PLoS Genetics
Volume 13, Issue 3, Pages e1006560
出版商
Public Library of Science (PLoS)
发表日期
2017-03-11
DOI
10.1371/journal.pgen.1006560
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Fine-Scale Human Population Structure in Southern Africa Reflects Ecogeographic Boundaries
- (2016) Caitlin Uren et al. GENETICS
- Fine-Scale Human Population Structure in Southern Africa Reflects Ecogeographic Boundaries
- (2016) Caitlin Uren et al. GENETICS
- Leveraging Distant Relatedness to Quantify Human Mutation and Gene-Conversion Rates
- (2015) Pier Francesco Palamara et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Evaluating the performance of selection scans to detect selective sweeps in domestic dogs
- (2015) Florencia Schlamp et al. MOLECULAR ECOLOGY
- Population genomics of Bronze Age Eurasia
- (2015) Morten E. Allentoft et al. NATURE
- A global reference for human genetic variation
- (2015) Richard A. Gibbs et al. NATURE
- Calibrating the Human Mutation Rate via Ancestral Recombination Density in Diploid Genomes
- (2015) Mark Lipson et al. PLoS Genetics
- Recent Selective Sweeps in North American Drosophila melanogaster Show Signatures of Soft Sweeps
- (2015) Nandita R. Garud et al. PLoS Genetics
- Determinants of Mutation Rate Variation in the Human Germline
- (2014) Laure Ségurel et al. Annual Review of Genomics and Human Genetics
- The African Genome Variation Project shapes medical genetics in Africa
- (2014) Deepti Gurdasani et al. NATURE
- Genome sequence of a 45,000-year-old modern human from western Siberia
- (2014) Qiaomei Fu et al. NATURE
- Ensembl 2015
- (2014) Fiona Cunningham et al. NUCLEIC ACIDS RESEARCH
- Natural selection for the Duffy-null allele in the recently admixed people of Madagascar
- (2014) J. A. Hodgson et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists
- (2014) Etienne Patin et al. Nature Communications
- A General Approach for Haplotype Phasing across the Full Spectrum of Relatedness
- (2014) Jared O'Connell et al. PLoS Genetics
- Plasmodium falciparum Erythrocyte Invasion: Combining Function with Immune Evasion
- (2014) Gavin J. Wright et al. PLoS Pathogens
- RFMix: A Discriminative Modeling Approach for Rapid and Robust Local-Ancestry Inference
- (2013) Brian K. Maples et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Inferring Admixture Histories of Human Populations Using Linkage Disequilibrium
- (2013) P.-R. Loh et al. GENETICS
- SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes
- (2013) Pavlos Pavlidis et al. MOLECULAR BIOLOGY AND EVOLUTION
- Great ape genetic diversity and population history
- (2013) Javier Prado-Martinez et al. NATURE
- The complete genome sequence of a Neanderthal from the Altai Mountains
- (2013) Kay Prüfer et al. NATURE
- Plasmodium vivax malaria in Duffy-negative individuals from Ethiopia
- (2013) Tamirat Gebru Woldearegai et al. TRANSACTIONS OF THE ROYAL SOCIETY OF TROPICAL MEDICINE AND HYGIENE
- rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure
- (2012) Mathieu Gautier et al. BIOINFORMATICS
- Whole-Genome Sequencing in Autism Identifies Hot Spots for De Novo Germline Mutation
- (2012) Jacob J. Michaelson et al. CELL
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- Plasmodium vivax infection in Anajás, State of Pará: no differential resistance profile among Duffy-negative and Duffy-positive individuals
- (2012) Tarcisio AA Carvalho et al. MALARIA JOURNAL
- Patterns and rates of exonic de novo mutations in autism spectrum disorders
- (2012) Benjamin M. Neale et al. NATURE
- De novo mutations revealed by whole-exome sequencing are strongly associated with autism
- (2012) Stephan J. Sanders et al. NATURE
- Rate of de novo mutations and the importance of father’s age to disease risk
- (2012) Augustine Kong et al. NATURE
- Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations
- (2012) Brian J. O’Roak et al. NATURE
- Estimating the human mutation rate using autozygosity in a founder population
- (2012) Catarina D Campbell et al. NATURE GENETICS
- Natural Selection Mediated Association of the Duffy (FY) Gene Polymorphisms with Plasmodium vivax Malaria in India
- (2012) Anita Chittoria et al. PLoS One
- Genomic Variation in Seven Khoe-San Groups Reveals Adaptation and Complex African History
- (2012) C. M. Schlebusch et al. SCIENCE
- A High-Coverage Genome Sequence from an Archaic Denisovan Individual
- (2012) M. Meyer et al. SCIENCE
- A Long Neglected World Malaria Map: Plasmodium vivax Endemicity in 2010
- (2012) Peter W. Gething et al. PLoS Neglected Tropical Diseases
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Human population dispersal "Out of Africa" estimated from linkage disequilibrium and allele frequencies of SNPs
- (2011) B. P. McEvoy et al. GENOME RESEARCH
- Population genetics of malaria resistance in humans
- (2011) P W Hedrick HEREDITY
- Vivax malaria in Mauritania includes infection of a Duffy-negative individual
- (2011) Nathalie Wurtz et al. MALARIA JOURNAL
- An Early Divergence of KhoeSan Ancestors from Those of Other Modern Humans Is Supported by an ABC-Based Analysis of Autosomal Resequencing Data
- (2011) Krishna R. Veeramah et al. MOLECULAR BIOLOGY AND EVOLUTION
- Inference of human population history from individual whole-genome sequences
- (2011) Heng Li et al. NATURE
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Fya/Fyb antigen polymorphism in human erythrocyte Duffy antigen affects susceptibility to Plasmodium vivax malaria
- (2011) C. L. King et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Demographic history and rare allele sharing among human populations
- (2011) S. Gravel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The global distribution of the Duffy blood group
- (2011) Rosalind E. Howes et al. Nature Communications
- MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus
- (2010) Gregory Ewing et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Insights into the Demographic History of African Pygmies from Complete Mitochondrial Genomes
- (2010) C. Batini et al. MOLECULAR BIOLOGY AND EVOLUTION
- Fine-scale recombination rate differences between sexes, populations and individuals
- (2010) Augustine Kong et al. NATURE
- FY polymorphisms and vivax malaria in inhabitants of Amazonas State, Brazil
- (2010) Sérgio Roberto Lopes Albuquerque et al. PARASITOLOGY RESEARCH
- Plasmodium vivax clinical malaria is commonly observed in Duffy-negative Malagasy people
- (2010) D. Menard et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- African great apes are natural hosts of multiple related malaria species, including Plasmodium falciparum
- (2010) F. Prugnolle et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- On the Diversity of Malaria Parasites in African Apes and the Origin of Plasmodium falciparum from Bonobos
- (2010) Sabrina Krief et al. PLoS Pathogens
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Origins and Genetic Diversity of Pygmy Hunter-Gatherers from Western Central Africa
- (2009) Paul Verdu et al. CURRENT BIOLOGY
- Constructing genomic maps of positive selection in humans: Where do we go from here?
- (2009) J. M. Akey GENOME RESEARCH
- Fast model-based estimation of ancestry in unrelated individuals
- (2009) D. H. Alexander et al. GENOME RESEARCH
- From evolutionary genetics to human immunology: how selection shapes host defence genes
- (2009) Luis B. Barreiro et al. NATURE REVIEWS GENETICS
- Genome-wide scans for footprints of natural selection
- (2009) T. K. Oleksyk et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Inferring the Demographic History of African Farmers and Pygmy Hunter–Gatherers Using a Multilocus Resequencing Data Set
- (2009) Etienne Patin et al. PLoS Genetics
- Maternal traces of deep common ancestry and asymmetric gene flow between Pygmy hunter-gatherers and Bantu-speaking farmers
- (2008) L. Quintana-Murci et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation
- (2008) J. Z. Li et al. SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started