The highly buffered Arabidopsis immune signaling network conceals the functions of its components

Multi-gene engineering in plants with RNA-guided Cas9 nuclease

(2016) Oleg Raitskin et al.   CURRENT OPINION IN BIOTECHNOLOGY

The ARGOS gene family functions in a negative feedback loop to desensitize plants to ethylene

(2015) Muneeza Iqbal Rai et al.   BMC PLANT BIOLOGY

Plant cells under siege: plant immune system versus pathogen effectors

(2015) Shuta Asai et al.   CURRENT OPINION IN PLANT BIOLOGY

Signaling Mechanisms in Pattern-Triggered Immunity (PTI)

(2015) Jean Bigeard et al.   Molecular Plant

Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis

(2015) Julieta L Mateos et al.   GENOME BIOLOGY

EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics

(2014) Ghanasyam Rallapalli et al.   BMC GENOMICS

Mechanisms Underlying Robustness and Tunability in a Plant Immune Signaling Network

(2014) Yungil Kim et al.   Cell Host & Microbe

Jasmonate-Triggered Plant Immunity

(2014) Marcelo L. Campos et al.   JOURNAL OF CHEMICAL ECOLOGY

Plant antimicrobial peptides

(2013) Robert Nawrot et al.   FOLIA MICROBIOLOGICA

Salicylic Acid Suppresses Jasmonic Acid Signaling Downstream of SCFCOI1-JAZ by Targeting GCC Promoter Motifs via Transcription Factor ORA59

(2013) D. Van der Does et al.   PLANT CELL

Identification of genes involved in the ACC-mediated control of root cell elongation in Arabidopsis thaliana

(2012) Marios Markakis et al.   BMC PLANT BIOLOGY

Coronatine Promotes Pseudomonas syringae Virulence in Plants by Activating a Signaling Cascade that Inhibits Salicylic Acid Accumulation

(2012) Xiao-yu Zheng et al.   Cell Host & Microbe

Hormonal Modulation of Plant Immunity

(2011) Corné M.J. Pieterse et al.   Annual Review of Cell and Developmental Biology

Regression shrinkage and selection via the lasso: a retrospective

(2011) Robert Tibshirani   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Timing of plant immune responses by a central circadian regulator

(2011) Wei Wang et al.   NATURE

CBP60g and SARD1 play partially redundant critical roles in salicylic acid signaling

(2011) Lin Wang et al.   PLANT JOURNAL

Derepression of ethylene-stabilized transcription factors (EIN3/EIL1) mediates jasmonate and ethylene signaling synergy in Arabidopsis

(2011) Z. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Manipulation of FASTQ data with Galaxy

(2010) D. Blankenberg et al.   BIOINFORMATICS

Comparing signaling mechanisms engaged in pattern-triggered and effector-triggered immunity

(2010) Kenichi Tsuda et al.   CURRENT OPINION IN PLANT BIOLOGY

Plant immunity: towards an integrated view of plant–pathogen interactions

(2010) Peter N. Dodds et al.   NATURE REVIEWS GENETICS

Direct transcriptional control of the Arabidopsis immune receptor FLS2 by the ethylene-dependent transcription factors EIN3 and EIL1

(2010) F. Boutrot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Network Modeling Reveals Prevalent Negative Regulatory Relationships between Signaling Sectors in Arabidopsis Immune Signaling

(2010) Masanao Sato et al.   PLoS Pathogens

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Networking by small-molecule hormones in plant immunity

(2009) Corné M J Pieterse et al.   Nature Chemical Biology

Highly Sensitive and High-Throughput Analysis of Plant Hormones Using MS-Probe Modification and Liquid Chromatography–Tandem Mass Spectrometry: An Application for Hormone Profiling in Oryza sativa

(2009) Mikiko Kojima et al.   PLANT AND CELL PHYSIOLOGY

ETHYLENE INSENSITIVE3 and ETHYLENE INSENSITIVE3-LIKE1 Repress SALICYLIC ACID INDUCTION DEFICIENT2 Expression to Negatively Regulate Plant Innate Immunity in Arabidopsis

(2009) H. Chen et al.   PLANT CELL

Network Properties of Robust Immunity in Plants

(2009) Kenichi Tsuda et al.   PLoS Genetics

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The Genetic Network Controlling theArabidopsisTranscriptional Response toPseudomonas syringaepv.maculicola: Roles of Major Regulators and the Phytotoxin Coronatine

(2008) Lin Wang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The AP2/ERF Domain Transcription Factor ORA59 Integrates Jasmonic Acid and Ethylene Signals in Plant Defense

(2008) M. Pre et al.   PLANT PHYSIOLOGY