A unique enhancer boundary complex on the mouse ribosomal RNA genes persists after loss of Rrn3 or UBF and the inactivation of RNA polymerase I transcription

Translational control by 5'-untranslated regions of eukaryotic mRNAs

(2016) A. G. Hinnebusch et al.   SCIENCE

Structure of the initiation-competent RNA polymerase I and its implication for transcription

(2016) Michael Pilsl et al.   Nature Communications

Cell Biology: Cohesin Rings Leave Loose Ends

(2015) Robert V. Skibbens   CURRENT BIOLOGY

Cell-fate determination by ubiquitin-dependent regulation of translation

(2015) Achim Werner et al.   NATURE

Ribosome profiling reveals the what, when, where and how of protein synthesis

(2015) Gloria A. Brar et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Depletion of the cisplatin targeted HMGB-box factor UBF selectively induces p53-independent apoptotic death in transformed cells

(2015) Nourdine Hamdane et al.   Oncotarget

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria

(2014) Robert Ekblom et al.   BMC GENOMICS

lncRNA Maturation to Initiate Heterochromatin Formation in the Nucleolus Is Required for Exit from Pluripotency in ESCs

(2014) Nataša Savić et al.   Cell Stem Cell

The maternal nucleolus plays a key role in centromere satellite maintenance during the oocyte to embryo transition

(2014) H. Fulka et al.   DEVELOPMENT

A novel role for the Pol I transcription factor UBTF in maintaining genome stability through the regulation of highly transcribed Pol II genes

(2014) Elaine Sanij et al.   GENOME RESEARCH

Binding of the Termination Factor Nsi1 to Its Cognate DNA Site Is Sufficient To Terminate RNA Polymerase I Transcription In Vitro and To Induce Termination In Vivo

(2014) P. Merkl et al.   MOLECULAR AND CELLULAR BIOLOGY

CTCF: an architectural protein bridging genome topology and function

(2014) Chin-Tong Ong et al.   NATURE REVIEWS GENETICS

Genome-wide and single-cell analyses reveal a context dependent relationship between CBP recruitment and gene expression

(2014) Lawryn H. Kasper et al.   NUCLEIC ACIDS RESEARCH

Conditional Inactivation of Upstream Binding Factor Reveals Its Epigenetic Functions and the Existence of a Somatic Nucleolar Precursor Body

(2014) Nourdine Hamdane et al.   PLoS Genetics

The shared genomic architecture of human nucleolar organizer regions

(2013) I. Floutsakou et al.   GENOME RESEARCH

DNA Binding by the Ribosomal DNA Transcription Factor Rrn3 Is Essential for Ribosomal DNA Transcription

(2013) Ann Stepanchick et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification

(2013) Housheng Hansen He et al.   NATURE METHODS

Overlapping chromatin-remodeling systems collaborate genome wide at dynamic chromatin transitions

(2013) Stephanie A Morris et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Translation factors and ribosomal proteins control tumor onset and progression: how?

(2013) F Loreni et al.   ONCOGENE

Genomic Characterization of the Mouse Ribosomal DNA Locus

(2013) Gabriel E. Zentner et al.   G3-Genes Genomes Genetics

Epigenetic control of RNA polymerase I transcription in mammalian cells

(2012) Ingrid Grummt et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The cellular abundance of the essential transcription termination factor TTF-I regulates ribosome biogenesis and is determined by MDM2 ubiquitinylation

(2012) Frédéric Lessard et al.   NUCLEIC ACIDS RESEARCH

Cohesin Proteins Promote Ribosomal RNA Production and Protein Translation in Yeast and Human Cells

(2012) Tania Bose et al.   PLoS Genetics

Establishment and Maintenance of Alternative Chromatin States at a Multicopy Gene Locus

(2011) Manuel Wittner et al.   CELL

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

(2011) Nicholas T. Ingolia et al.   CELL

A model for the topology of active ribosomal RNA genes

(2011) Serguei Denissov et al.   EMBO REPORTS

DNA methyltransferase inhibition may limit cancer cell growth by disrupting ribosome biogenesis

(2011) Tom Moss   Epigenetics

The Chromatin Remodelling Complex B-WICH Changes the Chromatin Structure and Recruits Histone Acetyl-Transferases to Active rRNA Genes

(2011) Anna Vintermist et al.   PLoS One

Alternative Chromatin Structures of the 35S rRNA Genes in Saccharomyces cerevisiae Provide a Molecular Basis for the Selective Recruitment of RNA Polymerases I and II

(2010) H. Goetze et al.   MOLECULAR AND CELLULAR BIOLOGY

The ARF Tumor Suppressor Controls Ribosome Biogenesis by Regulating the RNA Polymerase I Transcription Factor TTF-I

(2010) Frédéric Lessard et al.   MOLECULAR CELL

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

CTCF regulates the local epigenetic state of ribosomal DNA repeats

(2010) Suzanne van de Nobelen et al.   Epigenetics & Chromatin

Stalled Hox promoters as chromosomal boundaries

(2009) V. S. Chopra et al.   GENES & DEVELOPMENT

Loss of Human Ribosomal Gene CpG Methylation Enhances Cryptic RNA Polymerase II Transcription and Disrupts Ribosomal RNA Processing

(2009) Thérèse Gagnon-Kugler et al.   MOLECULAR CELL

The Epigenetics of rRNA Genes: From Molecular to Chromosome Biology

(2008) Brian McStay et al.   Annual Review of Cell and Developmental Biology

Structure and function of ribosomal RNA gene chromatin

(2008) Joanna L. Birch et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Epigenetic regulation of TTF-I-mediated promoter–terminator interactions of rRNA genes

(2008) Attila Németh et al.   EMBO JOURNAL

Actively transcribed rRNA genes in S. cerevisiae are organized in a specialized chromatin associated with the high-mobility group protein Hmo1 and are largely devoid of histone molecules

(2008) K. Merz et al.   GENES & DEVELOPMENT

UBF levels determine the number of active ribosomal RNA genes in mammals

(2008) Elaine Sanij et al.   JOURNAL OF CELL BIOLOGY

Early pre-implantation lethality in mice carrying truncated mutation in the RNA polymerase 1-2 gene

(2007) Hui Chen et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS