4.8 Article

Human RAD52 Captures and Holds DNA Strands, Increases DNA Flexibility, and Prevents Melting of Duplex DNA: Implications for DNA Recombination

期刊

CELL REPORTS
卷 18, 期 12, 页码 2845-2853

出版社

CELL PRESS
DOI: 10.1016/j.celrep.2017.02.068

关键词

-

资金

  1. French National Research Agency (project RADORDER) [ANR-10-BLAN-1521]
  2. ARC Foundation for Cancer Research
  3. A* MIDEX project for the Investissements d'Avenir >> French Government program [ANR-11-IDEX-0001-02]
  4. LASERLAB-EUROPE [284464]
  5. EC's Seventh Framework Programme
  6. College of Aix-Marseille Universite
  7. Nederlandse Organisatie voor Wetenschappelijk Onderzoek
  8. European Research Council starting [260849-PhysGene]
  9. Agence Nationale de la Recherche (ANR) [ANR-10-BLAN-1521] Funding Source: Agence Nationale de la Recherche (ANR)

向作者/读者索取更多资源

Human RAD52 promotes annealing of complementary single-stranded DNA (ssDNA). In-depth knowledge of RAD52-DNA interaction is required to understand how its activity is integrated in DNA repair processes. Here, we visualize individual fluorescent RAD52 complexes interacting with single DNA molecules. The interaction with ssDNA is rapid, static, and tight, where ssDNA appears to wrap around RAD52 complexes that promote intra-molecular bridging. With double-stranded DNA (dsDNA), interaction is slower, weaker, and often diffusive. Interestingly, force spectroscopy experiments show that RAD52 alters the mechanics dsDNA by enhancing DNA flexibility and increasing DNA contour length, suggesting intercalation. RAD52 binding changes the nature of the overstretching transition of dsDNA and prevents DNA melting, which is advantageous for strand clamping during or after annealing. DNA-bound RAD52 is efficient at capturing ssDNA in trans. Together, these effects may help key steps in DNA repair, such as second-end capture during homologous recombination or strand annealing during RAD51-independent recombination reactions.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.8
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Multidisciplinary Sciences

Duplex DNA and BLM regulate gate opening by the human TopoIIIα-RMI1-RMI2 complex

Julia A. M. Bakx, Andreas S. Biebricher, Graeme A. King, Panagiotis Christodoulis, Kata Sarlos, Anna H. Bizard, Ian D. Hickson, Gijs J. L. Wuite, Erwin J. G. Peterman

Summary: Topoisomerase IIIa is a type 1A topoisomerase that forms a complex with RMI1 and RMI2 called TRR in human cells. In this study, the authors used optical tweezers and fluorescence microscopy to investigate the catalytic steps of TRR. They found that TRR forms an open gate in single-stranded DNA and can bind a second single-stranded or double-stranded DNA molecule, leading to catenation. Interestingly, double-stranded DNA binding increases the gate size and the helicase BLM affects the flexibility of the gate. These findings suggest that TRR-mediated transfer of double-stranded DNA may be more important than previously believed.

NATURE COMMUNICATIONS (2022)

Article Biochemistry & Molecular Biology

CENP-B-mediated DNA loops regulate activity and stability of human centromeres

Florian Chardon, Aleksandre Japaridze, Hannes Witt, Leonid Velikovsky, Camellia Chakraborty, Therese Wilhelm, Marie Dumont, Wayne Yang, Carlos Kikuti, Stephane Gangnard, Anne-Sophie Mace, Gijs Wuite, Cees Dekker, Daniele Fachinetti

Summary: Chromosome inheritance relies on centromeres, which are regulated through DNA topology. The DNA-binding protein CENP-B compacts centromeres by forming DNA loops, maintaining centromere position and integrity.

MOLECULAR CELL (2022)

Article Multidisciplinary Sciences

The convergence of head-on DNA unwinding forks induces helicase oligomerization and activity transition

Lulu Bi, Zhenheng Qin, Teng Wang, Yanan Li, Xinshuo Jia, Xia Zhang, Xi-Miao Hou, Mauro Modesti, Xu-Guang Xi, Bo Sun

Summary: In this study, the relationship between helicase oligomerization and functional switching was investigated using single-molecule techniques and Bloom syndrome helicase. It was found that helicases can promptly oligomerize during DNA unwinding and transition from unwinding double-stranded DNA to translocating along single-stranded DNA. This transition allows for the displacement of single-stranded DNA-binding proteins, contributing to the maintenance of genome stability.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Article Biochemistry & Molecular Biology

RAD51AP1 regulates ALT-HDR through chromatin-directed homeostasis of TERRA

Nicole Kaminski, Anne R. Wondisford, Youngho Kwon, Michelle Lee Lynskey, Ragini Bhargava, Jonathan Barroso-Gonzalez, Laura Garcia-Exposito, Boxue He, Meng Xu, Dattatreya Mellacheruvu, Simon C. Watkins, Mauro Modesti, Kyle M. Miller, Alexey Nesvizhskii, Huaiying Zhang, Patrick Sung, Roderick J. O'Sullivan

Summary: In this study, the researchers found that RAD51AP1 interacts with TERRA and utilizes it to generate D and R-loop HR intermediates. RAD51AP1 binds to and stabilizes TERRA-containing R-loops, playing a role in the suppression of TERRA and prevention of TRCs during ALT-HDR. These findings provide insights into the important role of RAD51AP1 in the ALT mechanism and regulation of TERRA.

MOLECULAR CELL (2022)

Article Biochemistry & Molecular Biology

Catalytically inactive DNA ligase IV promotes DNA repair in living cells

Noah J. Goff, Manon Breniere, Christopher J. Buehl, Abinadabe J. de Melo, Hana Huskova, Takashi Ochi, Tom L. Blundell, Weifeng Mao, Kefei Yu, Mauro Modesti, Katheryn Meek

Summary: Studies show that inactive Lig4 can promote DNA repair by enhancing the activity of DNA ligase III, with repair products showing both alternative end-joining utilizing micro-homology and joints without micro-homology.

NUCLEIC ACIDS RESEARCH (2022)

Article Multidisciplinary Sciences

Homologous recombination-deficient mutation cluster in tumor suppressor RAD51C identified by comprehensive analysis of cancer variants

Rohit Prakash, Yashpal Rawal, Meghan R. Sullivan, McKenzie K. Grundy, Helene Bret, Michael J. Mihalevic, Hayley L. Rein, Jared M. Baird, Kristie Darrah, Fang Zhang, Raymond Wang, Tiffany A. Traina, Marc R. Radke, Scott H. Kaufmann, Elizabeth M. Swisher, Raphael Guerois, Mauro Modesti, Patrick Sung, Maria Jasin, Kara A. Bernstein

Summary: In this study, the authors investigated the mutations in RAD51C and found a cluster of variants that lead to HR deficiency and disruption of interactions with other RAD51 paralogs. Structural models were generated to explain the mechanisms of RAD51C interactions and ATP binding. Ovarian cancer patients with variants in this cluster showed longer survival, which may be relevant to the reversion potential of the variants.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Review Pharmacology & Pharmacy

Optical tweezers for drug discovery

Matthew T. J. Halma, Jack A. Tuszynski, Gijs J. L. Wuite

Summary: The time and cost of developing new therapeutic drugs is a significant burden, involving computational screening, compound assays, and expensive clinical trials. This review highlights the value of dynamic conformational information obtained through optical tweezers for targeting "undruggable" proteins. Optical tweezers provide insights into the relationship between biological mechanisms and structural conformations, aiding in drug discovery. Developing workflows and tools for optical tweezers will improve efficiency, allowing for greater adoption in the biopharmaceutical industry. As a complementary tool, optical tweezers increase the number of potential drug candidates, enhance understanding of a target's complex structural dynamics, and elucidate compound-target interactions.

DRUG DISCOVERY TODAY (2023)

Review Biochemistry & Molecular Biology

Unravelling How Single-Stranded DNA Binding Protein Coordinates DNA Metabolism Using Single-Molecule Approaches

Longfu Xu, Matthew T. J. Halma, Gijs J. L. Wuite

Summary: Single-stranded DNA-binding proteins (SSBs) are essential for DNA metabolism and play crucial roles in maintaining genome integrity and coordinating with other proteins involved in DNA replication, recombination, and repair. Recent advances in single-molecule techniques and structural methods have greatly improved our understanding of the binding dynamics and interaction of SSBs with ssDNA and other protein partners. We highlight the central coordination role of SSBs in directly modulating the activities of other proteins and discuss the various modes of interaction between SSBs and their protein partners, providing a comprehensive view of the interaction network shaped by SSBs.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2023)

Article Biochemistry & Molecular Biology

Regulation of T7 gp2.5 binding dynamics by its C-terminal tail, template conformation and sequence

Longfu Xu, Jordi Cabanas-Danes, Matthew T. J. Halma, Iddo Heller, Sarah A. Stratmann, Antoine M. van Oijen, Seung-Joo Lee, Erwin J. G. Peterman, Gijs J. L. Wuite

Summary: In vitro experiments show that bacteriophage T7 single-stranded DNA-binding protein (gp2.5) can protect transiently exposed regions of single-stranded DNA (ssDNA) through its dynamic interaction. Furthermore, the sequence of T7 gp2.5, the ssDNA conformation induced by template tension, and the acidic C-terminal domain of T7 gp2.5 significantly affect its DNA binding properties. Finally, a unique template-catalyzed recycling behavior of T7 gp2.5 is revealed, facilitating efficient spatial redistribution during the synthesis of successive Okazaki fragments.

NUCLEIC ACIDS RESEARCH (2023)

Article Optics

A small excitation window allows long-duration single-molecule imaging, with reduced background autofluorescence, in C. elegans neurons

Aniruddha Mitra, Elizaveta Loseva, Guus H. Haasnoot, Erwin J. G. Peterman

Summary: Single-particle imaging using laser-illuminated widefield epi-fluorescence microscopy is a powerful tool to investigate molecular processes in vivo. By exciting only a small region in chemosensory neurons in live C. elegans, long-duration single-particle imaging with improved quality can be achieved. Small-window illumination microscopy (SWIM) allows for reduced photobleaching and improved signal-to-background ratio, and can be applied to study intracellular transport or cytoskeletal dynamics in elongated protrusions.

OPTICS COMMUNICATIONS (2023)

Article Microbiology

The SMC-like RecN protein is at the crossroads of several genotoxic stress responses in Escherichia coli

Adrien Camus, Elena Espinosa, Penelope Zapater Baras, Parul Singh, Nicole Quenech'Du, Elise Vickridge, Mauro Modesti, Francois Xavier Barre, Olivier Espeli

Summary: DNA damage repair is crucial for genome maintenance and evolution. By studying two genotoxic antibiotics, it was found that only a small set of DNA repair proteins are involved in the repair of the lesions induced by these drugs. RecN, a SMC-like protein, plays an important role in controlling sister chromatids dynamics and genome morphology during the repair processes. However, the influence of RecN on sister chromatids dynamics is different in the processing of lesions induced by the two drugs.

FRONTIERS IN MICROBIOLOGY (2023)

Article Biochemistry & Molecular Biology

CRISPR-dependent Base Editing Screens Identify Separation of Function Mutants of RADX with Altered RAD51 Regulatory Activity

Madison B. Adolph, Atharv S. Garje, Swati Balakrishnan, Florian Morati, Mauro Modesti, Walter J. Chazin, David Cortez

Summary: RAD51 forms nucleoprotein filaments to promote DNA repair and replication processes, and its stability is regulated by RADX. Mutants of RADX with separation of function exhibit impaired ATP hydrolysis activity of RAD51, leading to accumulation of DNA damage and replication defects in cells.

JOURNAL OF MOLECULAR BIOLOGY (2023)

Meeting Abstract Biophysics

Contact-free high-throughput measurements of living cell mechanics using quantitative acoustophoresis

Vadim Bogatyr, Andreas S. Biebricher, Giulia Bergamaschi, Erwin J. G. Peterman, Gijs J. L. Wuite

BIOPHYSICAL JOURNAL (2023)

Meeting Abstract Biophysics

Single molecule manipulation and imaging of complex DNA-protein interactions

Gijs Wuite

BIOPHYSICAL JOURNAL (2023)

Article Nanoscience & Nanotechnology

Quantitative Acoustophoresis

Vadim Bogatyr, Andreas S. Biebricher, Giulia Bergamaschi, Erwin J. G. Peterman, Gijs J. L. Wuite

Summary: Studying cellular mechanics provides important insights into cell structure and health. The quantitative acoustophoresis (QAP) method allows simultaneous measurement of compressibility and density of multiple cells in a contact-free manner, offering a simple and effective alternative for studying biological particles. This technique not only measures mechanical properties of living cells, but can also sense artificial cytoskeletons, showing potential for a new approach in studying cellular mechanics.

ACS NANOSCIENCE AU (2022)

暂无数据