Genotyping-by-Sequencing Derived High-Density Linkage Map and its Application to QTL Mapping of Flag Leaf Traits in Bread Wheat

R Package ASMap: Efficient Genetic Linkage Map Construction and Diagnosis

(2017) Julian Taylor et al.   Journal of Statistical Software

Genotyping-by-sequencing approaches to characterize crop genomes: choosing the right tool for the right application

(2017) Armin Scheben et al.   PLANT BIOTECHNOLOGY JOURNAL

Identification of a major QTL for flag leaf glaucousness using a high-density SNP marker genetic map in hexaploid wheat

(2017) Chun-lian LI et al.   Journal of Integrative Agriculture

A highly recombined, high-density, eight-founder wheat MAGIC map reveals extensive segregation distortion and genomic locations of introgression segments

(2016) Keith A. Gardner et al.   PLANT BIOTECHNOLOGY JOURNAL

Characterization of a Wheat Breeders’ Array suitable for high-throughput SNP genotyping of global accessions of hexaploid bread wheat (Triticum aestivum)

(2016) Alexandra M. Allen et al.   PLANT BIOTECHNOLOGY JOURNAL

Application of genotyping by sequencing technology to a variety of crop breeding programs

(2016) Changsoo Kim et al.   PLANT SCIENCE

Nested Association Mapping of Stem Rust Resistance in Wheat Using Genotyping by Sequencing

(2016) Prabin Bajgain et al.   PLoS One

QTL mapping of flag leaf traits in common wheat using an integrated high-density SSR and SNP genetic linkage map

(2015) Qiuhong Wu et al.   EUPHYTICA

Mapping quantitative trait loci for plant adaptation and morphology traits in wheat using single nucleotide polymorphisms

(2015) C. Li et al.   EUPHYTICA

Genome-wide SNP discovery and identification of QTL associated with agronomic traits in oil palm using genotyping-by-sequencing (GBS)

(2015) Wirulda Pootakham et al.   GENOMICS

Making the Bread: Insights from Newly Synthesized Allohexaploid Wheat

(2015) Ai-li Li et al.   Molecular Plant

High-density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool

(2015) Mark O. Winfield et al.   PLANT BIOTECHNOLOGY JOURNAL

Inclusive Composite Interval Mapping of QTL by Environment Interactions in Biparental Populations

(2015) Shanshan Li et al.   PLoS One

Genotyping-by-sequencing (GBS) identified SNP tightly linked to QTL for pre-harvest sprouting resistance

(2015) Meng Lin et al.   THEORETICAL AND APPLIED GENETICS

Comparative fine mapping of the Wax 1 (W1) locus in hexaploid wheat

(2015) Ping Lu et al.   THEORETICAL AND APPLIED GENETICS

High-density linkage map construction and mapping of seed trait QTLs in chickpea (Cicer arietinum L.) using Genotyping-by-Sequencing (GBS)

(2015) Subodh Verma et al.   Scientific Reports

Application of Population Sequencing (POPSEQ) for Ordering and Imputing Genotyping-by-Sequencing Markers in Hexaploid Wheat

(2015) Erena A. Edae et al.   G3-Genes Genomes Genetics

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

(2015) Jarrod A Chapman et al.   GENOME BIOLOGY

A High-Density Genetic Map with Array-Based Markers Facilitates Structural and Quantitative Trait Locus Analyses of the Common Wheat Genome

(2014) Julio Cesar Masaru Iehisa et al.   DNA RESEARCH

Genomic prediction in biparental tropical maize populations in water-stressed and well-watered environments using low-density and GBS SNPs

(2014) X Zhang et al.   HEREDITY

A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding

(2014) Marco Maccaferri et al.   PLANT BIOTECHNOLOGY JOURNAL

Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array

(2014) Shichen Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

(2014) et al.   SCIENCE

Genotype × environment interaction QTL mapping in plants: lessons from Arabidopsis

(2014) Mohamed El-Soda et al.   TRENDS IN PLANT SCIENCE

Analysis of segregation distortion and its relationship to hybrid barriers in rice

(2014) Reflinur et al.   Rice

Resolution of Genetic Map Expansion Caused by Excess Heterozygosity in Plant Recombinant Inbred Populations

(2014) Sandra K. Truong et al.   G3-Genes Genomes Genetics

Segregation distortion caused by weak hybrid necrosis in recombinant inbred lines of common wheat

(2013) Shigeo Takumi et al.   GENETICA

Fine mapping TaFLW1, a major QTL controlling flag leaf width in bread wheat (Triticum aestivum L.)

(2013) Shulin Xue et al.   THEORETICAL AND APPLIED GENETICS

Genetic dissection of yield-related traits in a recombinant inbred line population created using a key breeding parent in China’s wheat breeding

(2013) Haiyan Jia et al.   THEORETICAL AND APPLIED GENETICS

An Ultra-High-Density, Transcript-Based, Genetic Map of Lettuce

(2013) Maria José Truco et al.   G3-Genes Genomes Genetics

Sequence-Based Mapping of the Polyploid Wheat Genome

(2013) Cyrille Saintenac et al.   G3-Genes Genomes Genetics

Identification of QTLs for eight agronomically important traits using an ultra-high-density map based on SNPs generated from high-throughput sequencing in sorghum under contrasting photoperiods

(2012) Guihua Zou et al.   JOURNAL OF EXPERIMENTAL BOTANY

Analysis of the bread wheat genome using whole-genome shotgun sequencing

(2012) Rachel Brenchley et al.   NATURE

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Genetic Insight into Yield-Associated Traits of Wheat Grown in Multiple Rain-Fed Environments

(2012) Xianshan Wu et al.   PLoS One

Genotype by Environment Interaction of Quantitative Traits: A Case Study in Barley

(2012) Fuping Zhao et al.   G3-Genes Genomes Genetics

Genotyping-by-Sequencing for Plant Breeding and Genetics

(2012) Jesse A. Poland et al.   Plant Genome

Gains in QTL Detection Using an Ultra-High Density SNP Map Based on Population Sequencing Relative to Traditional RFLP/SSR Markers

(2011) Huihui Yu et al.   PLoS One

Stability of QTL Across Environments and QTL-by-Environment Interactions for Plant and Ear Height in Maize

(2010) Yan ZHANG et al.   Agricultural Sciences in China

R/qtl: high-throughput multiple QTL mapping: Fig. 1.

(2010) Danny Arends et al.   BIOINFORMATICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Genomic Distribution of Quantitative Trait Loci for Yield and Yield-related Traits in Common Wheat

(2010) Li-Yi Zhang et al.   Journal of Integrative Plant Biology

Clustered QTL for source leaf size and yield traits in rice (Oryza sativa L.)

(2010) Peng Wang et al.   MOLECULAR BREEDING

Construction of a high-density composite map and comparative mapping of segregation distortion regions in barley

(2010) Haobing Li et al.   MOLECULAR GENETICS AND GENOMICS

A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals

(2009) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

High-throughput genotyping by whole-genome resequencing

(2009) X. Huang et al.   GENOME RESEARCH

Divergent Evolution of Duplicate Genes Leads to Genetic Incompatibilities Within A. thaliana

(2009) D. Bikard et al.   SCIENCE

A Genetic Map Constructed Using a Doubled Haploid Population Derived from Two Elite Chinese Common Wheat Varieties

(2008) Kun-Pu Zhang et al.   Journal of Integrative Plant Biology

High-density genetic map of durum wheat × wild emmer wheat based on SSR and DArT markers

(2008) Zvi Peleg et al.   THEORETICAL AND APPLIED GENETICS