Genome-Wide Comparative Analysis of Miniature Inverted Repeat Transposable Elements in 19 Arabidopsis thaliana Ecotype Accessions

detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes

(2016) Congting Ye et al.   Scientific Reports

A Genome-wide Study of “Non-3UTR” Polyadenylation Sites in Arabidopsis thaliana

(2016) Cheng Guo et al.   Scientific Reports

Widespread and evolutionary analysis of a MITE family Monkey King in Brassicaceae

(2015) Shutao Dai et al.   BMC PLANT BIOLOGY

Evolutionary genomics of miniature inverted-repeat transposable elements (MITEs) in Brassica

(2015) Faisal Nouroz et al.   MOLECULAR GENETICS AND GENOMICS

Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress

(2015) Irina Makarevitch et al.   PLoS Genetics

Identification, Diversity and Evolution of MITEs in the Genomes of Microsporidian Nosema Parasites

(2015) Qiang He et al.   PLoS One

Regulation of microRNA biogenesis

(2014) Minju Ha et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Genome-Wide Comparative Analysis of 20 Miniature Inverted-Repeat Transposable Element Families in Brassica rapa and B. oleracea

(2014) Perumal Sampath et al.   PLoS One

Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser

(2013) B. J. Raney et al.   BIOINFORMATICS

MITE Digger, an efficient and accurate algorithm for genome wide discovery of miniature inverted repeat transposable elements

(2013) Guojun Yang   BMC BIOINFORMATICS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

P-MITE: a database for plant miniature inverted-repeat transposable elements

(2013) Jiongjiong Chen et al.   NUCLEIC ACIDS RESEARCH

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Miniature Inverted-Repeat Transposable Elements (MITEs) Have Been Accumulated through Amplification Bursts and Play Important Roles in Gene Expression and Species Diversity in Oryza sativa

(2011) C. Lu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

(2011) Xiangchao Gan et al.   NATURE

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

BraSto, a Stowaway MITE from Brassica: recently active copies preferentially accumulate in the gene space

(2011) Véronique Sarilar et al.   PLANT MOLECULAR BIOLOGY

The Rice Miniature Inverted Repeat Transposable Element mPing Is an Effective Insertional Mutagen in Soybean

(2011) C. N. Hancock et al.   PLANT PHYSIOLOGY

MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences

(2010) Y. Han et al.   NUCLEIC ACIDS RESEARCH

Transposition of the Tourist-MITE mPing in yeast: an assay that retains key features of catalysis by the class 2 PIF/Harbinger superfamily

(2010) C Nathan Hancock et al.   Mobile DNA

Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.)

(2009) Andrej Benjak et al.   Genome Biology and Evolution

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Tuned for Transposition: Molecular Determinants Underlying the Hyperactivity of a Stowaway MITE

(2009) G. Yang et al.   SCIENCE

A Multiparent Advanced Generation Inter-Cross to Fine-Map Quantitative Traits in Arabidopsis thaliana

(2009) Paula X. Kover et al.   PLoS Genetics

The 1001 Genomes Project for Arabidopsis thaliana

(2009) Detlef Weigel et al.   GENOME BIOLOGY

A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica

(2008) Nobuhiko Oki et al.   GENES & GENETIC SYSTEMS

Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs

(2008) H. Kuang et al.   GENOME RESEARCH

A universal classification of eukaryotic transposable elements implemented in Repbase

(2008) Vladimir V. Kapitonov et al.   NATURE REVIEWS GENETICS