标题
Genome-wide identification and differential analysis of translational initiation
作者
关键词
-
出版物
Nature Communications
Volume 8, Issue 1, Pages -
出版商
Springer Nature
发表日期
2017-11-18
DOI
10.1038/s41467-017-01981-8
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints
- (2016) Yi Zhong et al. BIOINFORMATICS
- Ribosome Footprint Profiling of Translation throughout the Genome
- (2016) Nicholas T. Ingolia CELL
- Pervasive isoform‐specific translational regulation via alternative transcription start sites in mammals
- (2016) Xi Wang et al. Molecular Systems Biology
- Insights into the mechanisms of eukaryotic translation gained with ribosome profiling
- (2016) Dmitry E. Andreev et al. NUCLEIC ACIDS RESEARCH
- A peptide encoded by a transcript annotated as long noncoding RNA enhances SERCA activity in muscle
- (2016) B. R. Nelson et al. SCIENCE
- Translation from the 5' untranslated region shapes the integrated stress response
- (2016) S. R. Starck et al. SCIENCE
- Comparative survey of the relative impact of mRNA features on local ribosome profiling read density
- (2016) Patrick B. F. O’Connor et al. Nature Communications
- Tunable protein synthesis by transcript isoforms in human cells
- (2016) Stephen N Floor et al. eLife
- Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling
- (2016) Anil Raj et al. eLife
- RiboTools: a Galaxy toolbox for qualitative ribosome profiling analysis
- (2015) Rachel Legendre et al. BIOINFORMATICS
- A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance
- (2015) Douglas M. Anderson et al. CELL
- A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation
- (2015) Alexander P. Fields et al. MOLECULAR CELL
- Ribosome profiling reveals the what, when, where and how of protein synthesis
- (2015) Gloria A. Brar et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The awesome power of ribosome profiling
- (2015) Richard Jackson et al. RNA
- The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis
- (2015) Betty Y. Chung et al. RNA
- Principles of Long Noncoding RNA Evolution Derived from Direct Comparison of Transcriptomes in 17 Species
- (2015) Hadas Hezroni et al. Cell Reports
- Translational Control in Synaptic Plasticity and Cognitive Dysfunction
- (2014) Shelly A. Buffington et al. Annual Review of Neuroscience
- Identifying (non-)coding RNAs and small peptides: Challenges and opportunities
- (2014) Andrea Pauli et al. BIOESSAYS
- Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning
- (2014) Audrey M Michel et al. BMC BIOINFORMATICS
- Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation
- (2014) A. A. Bazzini et al. EMBO JOURNAL
- Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals
- (2014) S. Washietl et al. GENOME RESEARCH
- N-terminal Proteomics and Ribosome Profiling Provide a Comprehensive View of the Alternative Translation Initiation Landscape in Mice and Men
- (2014) Petra Van Damme et al. MOLECULAR & CELLULAR PROTEOMICS
- The evolution of lncRNA repertoires and expression patterns in tetrapods
- (2014) Anamaria Necsulea et al. NATURE
- Quantitative profiling of initiating ribosomes in vivo
- (2014) Xiangwei Gao et al. NATURE METHODS
- PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration
- (2014) Jeroen Crappé et al. NUCLEIC ACIDS RESEARCH
- Translation inhibitors cause abnormalities in ribosome profiling experiments
- (2014) Maxim V. Gerashchenko et al. NUCLEIC ACIDS RESEARCH
- Amino Acid Starvation Has Opposite Effects on Mitochondrial and Cytosolic Protein Synthesis
- (2014) Mark A. Johnson et al. PLoS One
- Toddler: An Embryonic Signal That Promotes Cell Movement via Apelin Receptors
- (2014) A. Pauli et al. SCIENCE
- Ribosome Profiling Reveals Pervasive Translation Outside of Annotated Protein-Coding Genes
- (2014) Nicholas T. Ingolia et al. Cell Reports
- Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq
- (2014) Julie L Aspden et al. eLife
- Differential protein occupancy profiling of the mRNA transcriptome
- (2014) Markus Schueler et al. GENOME BIOLOGY
- Assessing gene-level translational control from ribosome profiling
- (2013) Adam B. Olshen et al. BIOINFORMATICS
- Ribosome profiling reveals resemblance between long non-coding RNAs and 5′ leaders of coding RNAs
- (2013) Guo-Liang Chew et al. DEVELOPMENT
- The Translational Landscape of the Mammalian Cell Cycle
- (2013) Craig R. Stumpf et al. MOLECULAR CELL
- uORFdb—a comprehensive literature database on eukaryotic uORF biology
- (2013) Klaus Wethmar et al. NUCLEIC ACIDS RESEARCH
- TISdb: a database for alternative translation initiation in mammalian cells
- (2013) Ji Wan et al. NUCLEIC ACIDS RESEARCH
- The RNA Degradation Pathway Regulates the Function of GAS5 a Non-Coding RNA in Mammalian Cells
- (2013) Hidenori Tani et al. PLoS One
- Conserved Regulation of Cardiac Calcium Uptake by Peptides Encoded in Small Open Reading Frames
- (2013) E. G. Magny et al. SCIENCE
- Genome Regulation by Long Noncoding RNAs
- (2012) John L. Rinn et al. Annual Review of Biochemistry
- Introns in UTRs: Why we should stop ignoring them
- (2012) Alicia A. Bicknell et al. BIOESSAYS
- Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads
- (2012) Wei Li et al. BIOINFORMATICS
- Site identification in high-throughput RNA–protein interaction data
- (2012) Philip J. Uren et al. BIOINFORMATICS
- Observation of dually decoded regions of the human genome using ribosome profiling data
- (2012) A. M. Michel et al. GENOME RESEARCH
- Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting
- (2012) C. Fritsch et al. GENOME RESEARCH
- Peptidomic discovery of short open reading frame–encoded peptides in human cells
- (2012) Sarah A Slavoff et al. Nature Chemical Biology
- Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution
- (2012) S. Lee et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-wide functional analysis of human 5' untranslated region introns
- (2012) Can Cenik et al. GENOME BIOLOGY
- Estimation of alternative splicing isoform frequencies from RNA-Seq data
- (2011) Marius Nicolae et al. Algorithms for Molecular Biology
- anota: analysis of differential translation in genome-wide studies
- (2011) O. Larsson et al. BIOINFORMATICS
- Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
- (2011) Nicholas T. Ingolia et al. CELL
- Genome Analysis Reveals Interplay between 5′UTR Introns and Nuclear mRNA Export for Secretory and Mitochondrial Genes
- (2011) Can Cenik et al. PLoS Genetics
- Whole-exome sequencing for finding de novo mutations in sporadic mental retardation
- (2011) Peter N Robinson GENOME BIOLOGY
- ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions
- (2011) Naim U Rashid et al. GENOME BIOLOGY
- Length of the ORF, position of the first AUG and the Kozak motif are important factors in potential dual-coding transcripts
- (2010) Heng Xu et al. CELL RESEARCH
- Translational Regulation of Gene Expression during Conditions of Cell Stress
- (2010) Keith A. Spriggs et al. MOLECULAR CELL
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
- (2010) Mitchell Guttman et al. NATURE BIOTECHNOLOGY
- The mechanism of eukaryotic translation initiation and principles of its regulation
- (2010) Richard J. Jackson et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Identification of differential translation in genome wide studies
- (2010) O. Larsson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Statistical inferences for isoform expression in RNA-Seq
- (2009) Hui Jiang et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Regulation of Translation Initiation in Eukaryotes: Mechanisms and Biological Targets
- (2009) Nahum Sonenberg et al. CELL
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