Groundwater shapes sediment biogeochemistry and microbial diversity in a submerged Great Lake sinkhole

Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

(2015) Cindy J. Castelle et al.   CURRENT BIOLOGY

Hydrogen sulfide can inhibit and enhance oxygenic photosynthesis in a cyanobacterium from sulfidic springs

(2015) Judith M. Klatt et al.   ENVIRONMENTAL MICROBIOLOGY

Ecological and genetic interactions between cyanobacteria and viruses in a low-oxygen mat community inferred through metagenomics and metatranscriptomics

(2015) Alexander A. Voorhies et al.   ENVIRONMENTAL MICROBIOLOGY

Natural stressors in uncontaminated sediments of shallow freshwaters: The prevalence of sulfide, ammonia, and reduced iron

(2015) Lauren E. Kinsman-Costello et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Antarctic microbial mats: A modern analog for Archean lacustrine oxygen oases

(2015) Dawn Y. Sumner et al.   GEOLOGY

Dominance of sulfur-fueled iron oxide reduction in low-sulfate freshwater sediments

(2015) Colleen M Hansel et al.   ISME Journal

Benthic perspective on Earth’s oldest evidence for oxygenic photosynthesis

(2015) Stefan V. Lalonde et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seeking sunlight: rapid phototactic motility of filamentous mat-forming cyanobacteria optimize photosynthesis and enhance carbon burial in Lake Huron’s submerged sinkholes

(2015) Bopaiah A. Biddanda et al.   Frontiers in Microbiology

Community Composition of Known and Uncultured Archaeal Lineages in Anaerobic or Anoxic Wastewater Treatment Sludge

(2014) Kyohei Kuroda et al.   MICROBIAL ECOLOGY

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Underwater sinkhole sediments sequester Lake Huron’s carbon

(2013) Stephen C. Nold et al.   BIOGEOCHEMISTRY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Cyanobacterial life at low O2: community genomics and function reveal metabolic versatility and extremely low diversity in a Great Lakes sinkhole mat

(2012) A. A. VOORHIES et al.   Geobiology

Benthic macroinvertebrate and fish communities in Lake Huron are linked to submerged groundwater vents

(2011) TG Sanders et al.   Aquatic Biology

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

Eukaryal and archaeal diversity in a submerged sinkhole ecosystem influenced by sulfur-rich, hypoxic groundwater

(2010) Stephen C. Nold et al.   JOURNAL OF GREAT LAKES RESEARCH

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Benthic Bacterial Diversity in Submerged Sinkhole Ecosystems

(2009) S. C. Nold et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Observations of the Middle Island Sinkhole in Lake Huron – A Unique Hydrogeologic and Glacial Creation of 400 Million Years

(2009) Steven A. Ruberg et al.   MARINE TECHNOLOGY SOCIETY JOURNAL

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Desulfatirhabdium butyrativorans gen. nov., sp. nov., a butyrate-oxidizing, sulfate-reducing bacterium isolated from an anaerobic bioreactor

(2008) M. Balk et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY