A user guide to the Brassica 60K Illumina Infinium™ SNP genotyping array

A new model calling procedure for Illumina BeadArray data

(2016) Gengxin Li   BMC GENETICS

Haplotype hitchhiking promotes trait coselection inBrassica napus

(2016) Lunwen Qian et al.   PLANT BIOTECHNOLOGY JOURNAL

Effects of genome structure variation, homeologous genes and repetitive DNA on polyploid crop research in the age of genomics

(2016) Donghui Fu et al.   PLANT SCIENCE

A genome-wide association study of plant height and primary branch number in rapeseed ( Brassica napus )

(2016) Feng Li et al.   PLANT SCIENCE

Genomic Prediction of Testcross Performance in Canola (Brassica napus)

(2016) Habib U. Jan et al.   PLoS One

A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome

(2016) Wayne E. Clarke et al.   THEORETICAL AND APPLIED GENETICS

The Report of My Death was an Exaggeration: A Review for Researchers Using Microsatellites in the 21st Century

(2016) Richard G. J. Hodel et al.   Applications in Plant Sciences

Diverse regulatory factors associate with flowering time and yield responses in winter-type Brassica napus

(2015) Sarah Schiessl et al.   BMC GENOMICS

Seedling development traits in Brassica napus examined by gene expression analysis and association mapping

(2015) Niklas Körber et al.   BMC PLANT BIOLOGY

High-throughput genotyping for species identification and diversity assessment in germplasm collections

(2015) Annaliese S. Mason et al.   Molecular Ecology Resources

Understanding and utilizing crop genome diversity via high-resolution genotyping

(2015) Kai Voss-Fels et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-wide association analysis and differential expression analysis of resistance toSclerotiniastem rot inBrassica napus

(2015) Lijuan Wei et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-wide association mapping unravels the genetic control of seed germination and vigor in Brassica napus

(2015) Sarah V. Hatzig et al.   Frontiers in Plant Science

Identification of Candidate Genes for Seed Glucosinolate Content Using Association Mapping in Brassica napus L.

(2015) Cun-Min Qu et al.   Genes

Species-wide genome sequence and nucleotide polymorphisms from the model allopolyploid plant Brassica napus

(2015) Thomas Schmutzer et al.   Scientific Data

Sub-genomic selection patterns as a signature of breeding in the allopolyploid Brassica napus genome

(2015) Lunwen Qian et al.   BMC GENOMICS

Genome-Wide Association Study Dissects the Genetic Architecture of Seed Weight and Seed Quality in Rapeseed (Brassica napus L.)

(2014) F. Li et al.   DNA RESEARCH

A high-throughput SNP array in the amphidiploid species Brassica napus shows diversity in resistance genes

(2014) Jessica Dalton-Morgan et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

QTL analysis of root morphology, flowering time, and yield reveals trade-offs in response to drought in Brassica napus

(2014) Richard S. Fletcher et al.   JOURNAL OF EXPERIMENTAL BOTANY

High-resolution molecular karyotyping uncovers pairing between ancestrally relatedBrassicachromosomes

(2014) Annaliese S. Mason et al.   NEW PHYTOLOGIST

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

(2014) B. Chalhoub et al.   SCIENCE

Capturing sequence variation among flowering-time regulatory gene homologs in the allopolyploid crop species Brassica napus

(2014) Sarah Schiessl et al.   Frontiers in Plant Science

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

(2014) Isobel AP Parkin et al.   GENOME BIOLOGY

High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napus L

(2013) Régine Delourme et al.   BMC GENOMICS

Deciphering the Diploid Ancestral Genome of the MesohexaploidBrassica rapa

(2013) Feng Cheng et al.   PLANT CELL

Large SNP arrays for genotyping in crop plants

(2012) Martin W Ganal et al.   JOURNAL OF BIOSCIENCES

Accessing complex crop genomes with next-generation sequencing

(2012) David Edwards et al.   THEORETICAL AND APPLIED GENETICS

Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips

(2011) Matthew E Ritchie et al.   BMC BIOINFORMATICS

Identification of SNP and SSR markers in eggplant using RAD tag sequencing

(2011) Lorenzo Barchi et al.   BMC GENOMICS

Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing

(2011) Ian Bancroft et al.   NATURE BIOTECHNOLOGY

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

Genome structure affects the rate of autosyndesis and allosyndesis in AABC, BBAC and CCAB Brassica interspecific hybrids

(2010) Annaliese S. Mason et al.   CHROMOSOME RESEARCH

High level of resistance to Sclerotinia sclerotiorum in introgression lines derived from hybridization between wild crucifers and the crop Brassica species B. napus and B. juncea

(2010) Harsh Garg et al.   FIELD CROPS RESEARCH

A pipeline for high throughput detection and mapping of SNPs from EST databases

(2010) A. M. Anithakumari et al.   MOLECULAR BREEDING

The first meiosis of resynthesized Brassica napus, a genome blender

(2010) E. Szadkowski et al.   NEW PHYTOLOGIST

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips

(2009) M. E. Ritchie et al.   BIOINFORMATICS

Molecular Genetic Markers: Discovery, Applications, Data Storage and Visualisation

(2009) Chris Duran et al.   Current Bioinformatics

Discovering genetic polymorphisms in next-generation sequencing data

(2009) Michael Imelfort et al.   PLANT BIOTECHNOLOGY JOURNAL

Single nucleotide polymorphism (SNP) discovery in the polyploidBrassica napususing Solexa transcriptome sequencing

(2009) Martin Trick et al.   PLANT BIOTECHNOLOGY JOURNAL

Shifting Paradigm of Association Studies: Value of Rare Single-Nucleotide Polymorphisms

(2008) Ivan P. Gorlov et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Database indexing for production MegaBLAST searches

(2008) Aleksandr Morgulis et al.   BIOINFORMATICS

Chromosome ‘speed dating’ during meiosis of polyploid Brassica hybrids and haploids

(2008) S.D. Nicolas et al.   CYTOGENETIC AND GENOME RESEARCH

AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants

(2008) C. Duran et al.   NUCLEIC ACIDS RESEARCH