A high-throughput SNP array in the amphidiploid species Brassica napus shows diversity in resistance genes

SNP markers-based map construction and genome-wide linkage analysis inBrassica napus

(2014) Harsh Raman et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome wide SNP discovery in flax through next generation sequencing of reduced representation libraries

(2013) Santosh Kumar et al.   BMC GENOMICS

High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napus L

(2013) Régine Delourme et al.   BMC GENOMICS

A 34K SNP genotyping array forPopulus trichocarpa: Design, application to the study of natural populations and transferability to otherPopulusspecies

(2013) A. Geraldes et al.   Molecular Ecology Resources

High-throughput genomics in sorghum: from whole-genome resequencing to a SNP screening array

(2013) Wubishet A. Bekele et al.   PLANT BIOTECHNOLOGY JOURNAL

Development and Evaluation of SoySNP50K, a High-Density Genotyping Array for Soybean

(2013) Qijian Song et al.   PLoS One

Linkage Analysis and QTL Mapping Using SNP Dosage Data in a Tetraploid Potato Mapping Population

(2013) Christine A. Hackett et al.   PLoS One

Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars

(2013) C. R. Cavanagh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population structure, genetic diversity and linkage disequilibrium in elite winter wheat assessed with SNP and SSR markers

(2013) Tobias Würschum et al.   THEORETICAL AND APPLIED GENETICS

Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum ; Fabaceae), a crop species without a reference genome

(2012) Sarwar Azam et al.   AMERICAN JOURNAL OF BOTANY

Construction and analysis of a high-density genetic linkage map in cabbage (Brassica oleracea L. var. capitata)

(2012) Wanxing Wang et al.   BMC GENOMICS

High-throughput polymorphism detection and genotyping in Brassica napus using next-generation RAD sequencing

(2012) Anja Bus et al.   BMC GENOMICS

Special features of RAD Sequencing data: implications for genotyping

(2012) John W. Davey et al.   MOLECULAR ECOLOGY

Genome-Wide SNP Detection, Validation, and Development of an 8K SNP Array for Apple

(2012) David Chagné et al.   PLoS One

SNP Discovery and Development of a High-Density Genotyping Array for Sunflower

(2012) Eleni Bachlava et al.   PLoS One

Integration of Two Diploid Potato Linkage Maps with the Potato Genome Sequence

(2012) Kimberly J. Felcher et al.   PLoS One

Discovery of Pod Shatter-Resistant Associated SNPs by Deep Sequencing of a Representative Library Followed by Bulk Segregant Analysis in Rapeseed

(2012) Zhiyong Hu et al.   PLoS One

Development of a Large SNP Genotyping Array and Generation of High-Density Genetic Maps in Tomato

(2012) Sung-Chur Sim et al.   PLoS One

High-Density SNP Genotyping of Tomato (Solanum lycopersicum L.) Reveals Patterns of Genetic Variation Due to Breeding

(2012) Sung-Chur Sim et al.   PLoS One

Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection

(2011) Riaz Ahmad et al.   BMC GENOMICS

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence

(2011) Frank M You et al.   BMC GENOMICS

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.)

(2011) Grit Haseneyer et al.   BMC PLANT BIOLOGY

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

Identification, validation and high-throughput genotyping of transcribed gene SNPs in cassava

(2011) Morag E. Ferguson et al.   THEORETICAL AND APPLIED GENETICS

Patterns of Population Structure and Environmental Associations to Aridity Across the Range of Loblolly Pine (Pinus taeda L., Pinaceae)

(2010) A. J. Eckert et al.   GENETICS

SNP discovery by amplicon sequencing and multiplex SNP genotyping in the allopolyploid species Brassica napusThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”.

(2010) G. Durstewitz et al.   GENOME

A pipeline for high throughput detection and mapping of SNPs from EST databases

(2010) A. M. Anithakumari et al.   MOLECULAR BREEDING

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Rapid Genomic Characterization of the Genus Vitis

(2010) Sean Myles et al.   PLoS One

Single nucleotide polymorphism discovery in barley using autoSNPdb

(2009) Chris Duran et al.   PLANT BIOTECHNOLOGY JOURNAL

Discovering genetic polymorphisms in next-generation sequencing data

(2009) Michael Imelfort et al.   PLANT BIOTECHNOLOGY JOURNAL

Single nucleotide polymorphism (SNP) discovery in the polyploidBrassica napususing Solexa transcriptome sequencing

(2009) Martin Trick et al.   PLANT BIOTECHNOLOGY JOURNAL

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

(2008) Evandro Novaes et al.   BMC GENOMICS

High-throughput genotyping with the GoldenGate assay in the complex genome of soybean

(2008) David L. Hyten et al.   THEORETICAL AND APPLIED GENETICS