Predictive ability of genomic selection models in a multi-population perennial ryegrass training set using genotyping-by-sequencing

Persistency of Prediction Accuracy and Genetic Gain in Synthetic Populations Under Recurrent Genomic Selection

(2017) Dominik Müller et al.   G3-Genes Genomes Genetics

Optimizing Training Population Size and Genotyping Strategy for Genomic Prediction Using Association Study Results and Pedigree Information. A Case of Study in Advanced Wheat Breeding Lines

(2017) Fabio Cericola et al.   PLoS One

Extending the Marker × Environment Interaction Model for Genomic-Enabled Prediction and Genome-Wide Association Analysis in Durum Wheat

(2016) José Crossa et al.   CROP SCIENCE

An economically based evaluation index for perennial and short-term ryegrasses in New Zealand dairy farm systems

(2016) D. F. Chapman et al.   GRASS AND FORAGE SCIENCE

Accuracy of Genomic Prediction in Switchgrass ( Panicum virgatum L.) Improved by Accounting for Linkage Disequilibrium

(2016) Guillaume P. Ramstein et al.   G3-Genes Genomes Genetics

Implementation of Genomic Prediction in Lolium perenne (L.) Breeding Populations

(2016) Nastasiya F. Grinberg et al.   Frontiers in Plant Science

Genomic dissection and prediction of heading date in perennial ryegrass

(2015) Dario Fè et al.   BMC GENOMICS

Accuracy of genomic selection for alfalfa biomass yield in different reference populations

(2015) Paolo Annicchiarico et al.   BMC GENOMICS

Construction of relatedness matrices using genotyping-by-sequencing data

(2015) Ken G. Dodds et al.   BMC GENOMICS

Application of the Smith-Hazel Selection Index for Improving Biomass Yield and Quality of Switchgrass

(2015) M. Z. Z. Jahufer et al.   CROP SCIENCE

Genetic and Environmental Variation in a Commercial Breeding Program of Perennial Ryegrass

(2015) Dario Fè et al.   CROP SCIENCE

A synteny-based draft genome sequence of the forage grassLolium perenne

(2015) Stephen L. Byrne et al.   PLANT JOURNAL

Comparison of Genomic Selection Models to Predict Flowering Time and Spike Grain Number in Two Hexaploid Wheat Doubled Haploid Populations

(2015) Saravanan Thavamanikumar et al.   G3-Genes Genomes Genetics

Genomic Prediction of Biomass Yield in Two Selection Cycles of a Tetraploid Alfalfa Breeding Population

(2015) Xuehui Li et al.   Plant Genome

Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines

(2015) Jennifer Spindel et al.   PLoS Genetics

Regularization Paths for Generalized Linear Models via Coordinate Descent

(2015) Jerome Friedman et al.   Journal of Statistical Software

Bridging the gap between marker-assisted and genomic selection of heading time and plant height in hybrid wheat

(2014) Y Zhao et al.   HEREDITY

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Implementation and accuracy of genomic selection

(2013) Jeremy F. Taylor   AQUACULTURE

Genomic Selection in Forage Breeding: Accuracy and Methods

(2013) Rosangela Maria Simeão Resende et al.   CROP SCIENCE

Genomic BLUP Decoded: A Look into the Black Box of Genomic Prediction

(2013) D. Habier et al.   GENETICS

Prospects for genomic selection in forage plant species

(2013) Benjamin J. Hayes et al.   PLANT BREEDING

Imputation of Unordered Markers and the Impact on Genomic Selection Accuracy

(2013) Jessica E. Rutkoski et al.   G3-Genes Genomes Genetics

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Genomic Selection using Multiple Populations

(2012) T. Schulz-Streeck et al.   CROP SCIENCE

Accuracy of Genomic Selection Methods in a Standard Data Set of Loblolly Pine (Pinus taeda L.)

(2012) M. F. R. Resende et al.   GENETICS

Whole-Genome Regression and Prediction Methods Applied to Plant and Animal Breeding

(2012) G. de los Campos et al.   GENETICS

Multibreed genomic evaluations using purebred Holsteins, Jerseys, and Brown Swiss

(2012) K.M. Olson et al.   JOURNAL OF DAIRY SCIENCE

Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels

(2012) M. Erbe et al.   JOURNAL OF DAIRY SCIENCE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Genomic Selection in Plant Breeding: A Comparison of Models

(2011) Nicolas Heslot et al.   CROP SCIENCE

Short communication: Genomic selection using a multi-breed, across-country reference population

(2011) J.E. Pryce et al.   JOURNAL OF DAIRY SCIENCE

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Accuracy and Training Population Design for Genomic Selection on Quantitative Traits in Elite North American Oats

(2011) Franco G. Asoro et al.   Plant Genome

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Factors Affecting Accuracy From Genomic Selection in Populations Derived From Multiple Inbred Lines: A Barley Case Study

(2009) S. Zhong et al.   GENETICS

Reliability of Genomic Predictions Across Multiple Populations

(2009) A. P. W. de Roos et al.   GENETICS

Invited review: Genomic selection in dairy cattle: Progress and challenges

(2009) B.J. Hayes et al.   JOURNAL OF DAIRY SCIENCE

Genotype × environment interactions for herbage yield of perennial ryegrass sward plots in Ireland

(2008) P. Conaghan et al.   GRASS AND FORAGE SCIENCE

Genomic selection using different marker types and densities

(2008) T. R. Solberg et al.   JOURNAL OF ANIMAL SCIENCE

Invited Review: Reliability of genomic predictions for North American Holstein bulls

(2008) P.M. VanRaden et al.   JOURNAL OF DAIRY SCIENCE

A high-throughput protocol for extracting high-purity genomic DNA from plants and animals

(2008) R. WHITLOCK et al.   Molecular Ecology Resources

The impact of genetic relationship information on genome-assisted breeding values

(2007) D. Habier et al.   GENETICS