标题
Why Concatenation Fails Near the Anomaly Zone
作者
关键词
-
出版物
SYSTEMATIC BIOLOGY
Volume 67, Issue 1, Pages 158-169
出版商
Oxford University Press (OUP)
发表日期
2017-07-05
DOI
10.1093/sysbio/syx063
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The effects of subsampling gene trees on coalescent methods applied to ancient divergences
- (2016) Mark P. Simmons et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics
- (2016) Scott V. Edwards et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- ddRAD-seq phylogenetics based on nucleotide, indel, and presence–absence polymorphisms: Analyses of two avian genera with contrasting histories
- (2016) Jeffrey M. DaCosta et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Inconsistency of Species Tree Methods under Gene Flow
- (2016) Claudia Solís-Lemus et al. SYSTEMATIC BIOLOGY
- Detecting the Anomaly Zone in Species Trees and Evidence for a Misleading Signal in Higher-Level Skink Phylogeny (Squamata: Scincidae).
- (2016) Charles W. Linkem et al. SYSTEMATIC BIOLOGY
- Gene Tree Discordance Causes Apparent Substitution Rate Variation
- (2016) Fábio K. Mendes et al. SYSTEMATIC BIOLOGY
- Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation
- (2016) James B. Pease et al. PLOS BIOLOGY
- Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting
- (2016) Claudia Solís-Lemus et al. PLoS Genetics
- How reticulated are species?
- (2015) James Mallet et al. BIOESSAYS
- ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
- (2015) Siavash Mirarab et al. BIOINFORMATICS
- Irrational exuberance for resolved species trees
- (2015) Matthew W. Hahn et al. EVOLUTION
- Phylogenomics of Phrynosomatid Lizards: Conflicting Signals from Sequence Capture versus Restriction Site Associated DNA Sequencing
- (2015) Adam D. Leaché et al. Genome Biology and Evolution
- Consistency of a phylogenetic tree maximum likelihood estimator
- (2015) Arindam RoyChoudhury et al. JOURNAL OF STATISTICAL PLANNING AND INFERENCE
- Multilocus species tree analyses resolve the ancient radiation of the subtribe Zizaniinae (Poaceae)
- (2015) Liang Tang et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods
- (2015) Sebastien Roch et al. SYSTEMATIC BIOLOGY
- PoMo: An Allele Frequency-Based Approach for Species Tree Estimation
- (2015) Nicola De Maio et al. SYSTEMATIC BIOLOGY
- There are no caterpillars in a wicked forest
- (2015) James H. Degnan et al. THEORETICAL POPULATION BIOLOGY
- Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent
- (2015) Sebastien Roch et al. THEORETICAL POPULATION BIOLOGY
- Model-based approach to test hard polytomies in theEulaemusclade of the most diverse South American lizard genusLiolaemus(Liolaemini, Squamata)
- (2015) Melisa Olave et al. ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds
- (2015) Alexander Suh et al. PLOS BIOLOGY
- Phylogenetic analysis at deep timescales: Unreliable gene trees, bypassed hidden support, and the coalescence/concatalescence conundrum
- (2014) John Gatesy et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The genomic substrate for adaptive radiation in African cichlid fish
- (2014) David Brawand et al. NATURE
- Comparative genomics reveals insights into avian genome evolution and adaptation
- (2014) G. Zhang et al. SCIENCE
- Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting
- (2014) Siavash Mirarab et al. SYSTEMATIC BIOLOGY
- Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees
- (2013) Y.-C. Wu et al. GENOME RESEARCH
- The Influence of Gene Flow on Species Tree Estimation: A Simulation Study
- (2013) Adam D. Leaché et al. SYSTEMATIC BIOLOGY
- Computational approaches to species phylogeny inference and gene tree reconciliation
- (2013) Luay Nakhleh TRENDS IN ECOLOGY & EVOLUTION
- Evolutionary Inferences from Phylogenies: A Review of Methods
- (2012) Brian C. O'Meara Annual Review of Ecology Evolution and Systematics
- Is Recombination a Problem for Species-Tree Analyses?
- (2012) Hayley C. Lanier et al. SYSTEMATIC BIOLOGY
- Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection
- (2011) A. Hobolth et al. GENOME RESEARCH
- BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis
- (2010) Bret R. Larget et al. BIOINFORMATICS
- A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
- (2010) Liang Liu et al. BMC EVOLUTIONARY BIOLOGY
- Bayesian Inference of Species Trees from Multilocus Data
- (2009) J. Heled et al. MOLECULAR BIOLOGY AND EVOLUTION
- What Is the Danger of the Anomaly Zone for Empirical Phylogenetics?
- (2009) Huateng Huang et al. SYSTEMATIC BIOLOGY
- Phylogenetic Analysis in the Anomaly Zone
- (2009) Liang Liu et al. SYSTEMATIC BIOLOGY
- Estimating Species Phylogenies Using Coalescence Times among Sequences
- (2009) Liang Liu et al. SYSTEMATIC BIOLOGY
- Gene tree discordance, phylogenetic inference and the multispecies coalescent
- (2009) James H. Degnan et al. TRENDS IN ECOLOGY & EVOLUTION
- Fine-Scale Phylogenetic Discordance across the House Mouse Genome
- (2009) Michael A. White et al. PLoS Genetics
- PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
- (2008) Cuong Than et al. BMC BIOINFORMATICS
- IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?
- (2008) Scott V. Edwards EVOLUTION
- Discordance of Species Trees with Their Most Likely Gene Trees: The Case of Five Taxa
- (2008) Noah A. Rosenberg et al. SYSTEMATIC BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started