Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking
出版年份 2017 全文链接
标题
Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking
作者
关键词
-
出版物
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Volume 85, Issue 3, Pages 497-512
出版商
Wiley
发表日期
2016-12-27
DOI
10.1002/prot.25234
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- InterEvDock: a docking server to predict the structure of protein–protein interactions using evolutionary information
- (2016) Jinchao Yu et al. NUCLEIC ACIDS RESEARCH
- Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment
- (2016) Marc F. Lensink et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Structural basis for haem piracy from host haemopexin by Haemophilus influenzae
- (2016) Silvia Zambolin et al. Nature Communications
- Specific GFP-binding artificial proteins ( Rep): a new tool for in vitro to live cell applications
- (2015) A. Chevrel et al. BIOSCIENCE REPORTS
- Exploring the potential of global protein–protein docking: an overview and critical assessment of current programs for automatic ab initio docking
- (2015) Sheng-You Huang DRUG DISCOVERY TODAY
- Interaction with Single-stranded DNA-binding Protein StimulatesEscherichia coliRibonuclease HI Enzymatic Activity
- (2015) Christine Petzold et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Structure of UBE2Z Enzyme Provides Functional Insight into Specificity in the FAT10 Protein Conjugation Machinery
- (2015) Julien Schelpe et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Structures of the Ultra-High-Affinity Protein–Protein Complexes of Pyocins S2 and AP41 and Their Cognate Immunity Proteins from Pseudomonas aeruginosa
- (2015) Amar Joshi et al. JOURNAL OF MOLECULAR BIOLOGY
- Mechanism of UCH-L5 Activation and Inhibition by DEUBAD Domains in RPN13 and INO80G
- (2015) Danny D. Sahtoe et al. MOLECULAR CELL
- Search strategies and evaluation in protein–protein docking: principles, advances and challenges
- (2014) Sheng-You Huang DRUG DISCOVERY TODAY
- Crystal structure of the PRC1 ubiquitylation module bound to the nucleosome
- (2014) Robert K. McGinty et al. NATURE
- Sequence co-evolution gives 3D contacts and structures of protein complexes
- (2014) Thomas A Hopf et al. eLife
- Evaluating template-based and template-free protein-protein complex structure prediction
- (2013) T. Vreven et al. BRIEFINGS IN BIOINFORMATICS
- Computational design of protein–protein interactions
- (2013) Gideon Schreiber et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Template-based structure modeling of protein–protein interactions
- (2013) Andras Szilagyi et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Structural and Biochemical Basis for Ubiquitin Ligase Recruitment by Arrestin-related Domain-containing Protein-3 (ARRDC3)
- (2013) Shiqian Qi et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Mapping Monomeric Threading to Protein–Protein Structure Prediction
- (2013) Aysam Guerler et al. Journal of Chemical Information and Modeling
- Structural mechanisms of PriA-mediated DNA replication restart
- (2013) B. Bhattacharyya et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Inclusion of the orientational entropic effect and low-resolution experimental information for protein-protein docking in Critical Assessment of PRedicted Interactions (CAPRI)
- (2013) Sheng-You Huang et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Performance of ZDOCK in CAPRI rounds 20-26
- (2013) Thom Vreven et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Expanding the frontiers of protein-protein modeling: From docking and scoring to binding affinity predictions and other challenges
- (2013) Chiara Pallara et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Global and local structural similarity in protein-protein complexes: Implications for template-based docking
- (2013) Petras J. Kundrotas et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Improved flexible refinement of protein docking in CAPRI rounds 22-27
- (2013) Yang Shen PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Sampling and scoring: A marriage made in heaven
- (2013) Sandor Vajda et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Blind prediction of interfacial water positions in CAPRI
- (2013) Marc F. Lensink et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Using the concept of transient complex for affinity predictions in CAPRI rounds 20-27 and beyond
- (2013) Sanbo Qin et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Flexible docking and refinement with a coarse-grained protein model using ATTRACT
- (2013) Sjoerd de Vries et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- A Markov-chain model description of binding funnels to enhance the ranking of docked solutions
- (2013) Mieczyslaw Torchala et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Defining the limits of homology modeling in information-driven protein docking
- (2013) J. P. G. L. M. Rodrigues et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Docking, scoring, and affinity prediction in CAPRI
- (2013) Marc F. Lensink et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- How good is automated protein docking?
- (2013) Dima Kozakov et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Protein-protein Docking and Hot-spot Prediction for Drug Discovery
- (2012) Solene Grosdidier et al. CURRENT PHARMACEUTICAL DESIGN
- Structure-based prediction of protein–protein interactions on a genome-wide scale
- (2012) Qiangfeng Cliff Zhang et al. NATURE
- Templates are available to model nearly all complexes of structurally characterized proteins
- (2012) P. J. Kundrotas et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Spatial clustering of protein binding sites for template based protein docking
- (2011) Anisah W. Ghoorah et al. BIOINFORMATICS
- Recognition of UbcH5c and the nucleosome by the Bmi1/Ring1b ubiquitin ligase complex
- (2011) Matthew L Bentley et al. EMBO JOURNAL
- The structural basis of Edc3- and Scd6-mediated activation of the Dcp1:Dcp2 mRNA decapping complex
- (2011) Simon A Fromm et al. EMBO JOURNAL
- Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM
- (2011) Nurcan Tuncbag et al. Nature Protocols
- Protein-Protein Complex Structure Predictions by Multimeric Threading and Template Recombination
- (2011) Srayanta Mukherjee et al. STRUCTURE
- Accounting for conformational changes during protein–protein docking
- (2010) Martin Zacharias CURRENT OPINION IN STRUCTURAL BIOLOGY
- Protein–protein docking tested in blind predictions: the CAPRI experiment
- (2010) Joël Janin Molecular BioSystems
- Selection of near-native poses in CAPRI rounds 13-19
- (2010) Sanbo Qin et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- An integrated suite of fast docking algorithms
- (2010) Efrat Mashiach et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- MDockPP: A hierarchical approach for protein-protein docking and its application to CAPRI rounds 15-19
- (2010) Sheng-You Huang et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Blind predictions of protein interfaces by docking calculations in CAPRI
- (2010) Marc F. Lensink et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- SSB as an Organizer/Mobilizer of Genome Maintenance Complexes
- (2008) Robert D. Shereda et al. CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY
- Recent Progress and Future Directions in Protein-Protein Docking
- (2008) David Ritchie CURRENT PROTEIN & PEPTIDE SCIENCE
- An iterative knowledge-based scoring function for protein-protein recognition
- (2008) Sheng-You Huang et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Principles of flexible protein-protein docking
- (2008) Nelly Andrusier et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now