Scipion web tools: Easy to use cryo-EM image processing over the web

A review of resolution measures and related aspects in 3D Electron Microscopy

(2017) C.O.S. Sorzano et al.   PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY

3DIANA: 3D Domain Interaction Analysis: A Toolbox for Quaternary Structure Modeling

(2016) Joan Segura et al.   BIOPHYSICAL JOURNAL

Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy

(2016) J.M. de la Rosa-Trevín et al.   JOURNAL OF STRUCTURAL BIOLOGY

Single particle electron cryomicroscopy: trends, issues and future perspective

(2016) Kutti R. Vinothkumar et al.   QUARTERLY REVIEWS OF BIOPHYSICS

Particle alignment reliability in single particle electron cryomicroscopy: a general approach

(2016) J. Vargas et al.   Scientific Reports

Using neighborhood cohesiveness to infer interactions between protein domains

(2015) Joan Segura et al.   BIOINFORMATICS

Validating maps from single particle electron cryomicroscopy

(2015) Peter B Rosenthal et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Alignment of direct detection device micrographs using a robust Optical Flow approach

(2015) Vahid Abrishami et al.   JOURNAL OF STRUCTURAL BIOLOGY

A statistical approach to the initial volume problem in Single Particle Analysis by Electron Microscopy

(2015) C.O.S. Sorzano et al.   JOURNAL OF STRUCTURAL BIOLOGY

NGL Viewer: a web application for molecular visualization

(2015) Alexander S. Rose et al.   NUCLEIC ACIDS RESEARCH

Efficient initial volume determination from electron microscopy images of single particles

(2014) Javier Vargas et al.   BIOINFORMATICS

The Phantom in the Noise and Validation of 3D EM Reconstructions

(2014) J. Bernard Heymann   MICROSCOPY AND MICROANALYSIS

Maskiton: Interactive, web-based classification of single-particle electron microscopy images

(2013) Craig Yoshioka et al.   JOURNAL OF STRUCTURAL BIOLOGY

One number does not fit all: Mapping local variations in resolution in cryo-EM reconstructions

(2013) Giovanni Cardone et al.   JOURNAL OF STRUCTURAL BIOLOGY

Quantifying the local resolution of cryo-EM density maps

(2013) Alp Kucukelbir et al.   NATURE METHODS

3did: a catalog of domain-based interactions of known three-dimensional structure

(2013) Roberto Mosca et al.   NUCLEIC ACIDS RESEARCH

WeNMR: Structural Biology on the Grid

(2012) Tsjerk A. Wassenaar et al.   Journal of Grid Computing

Overview of theCCP4 suite and current developments

(2011) Martyn D. Winn et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY