Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics

Mechanism of Action of ABC Importers: Conservation, Divergence, and Physiological Adaptations

(2017) Oded Lewinson et al.   JOURNAL OF MOLECULAR BIOLOGY

Crustacean zooplankton release copious amounts of dissolved organic matter as taurine in the ocean

(2017) Elisabeth L. Clifford et al.   LIMNOLOGY AND OCEANOGRAPHY

Molecular properties of deep-sea dissolved organic matter are predictable by the central limit theorem: Evidence from tandem FT-ICR-MS

(2017) Maren Zark et al.   MARINE CHEMISTRY

Transporters as information processors in bacterial signalling pathways

(2017) Hannah Piepenbreier et al.   MOLECULAR MICROBIOLOGY

Insights into the lifestyle of uncultured bacterial natural product factories associated with marine sponges

(2017) Gerald Lackner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns

(2016) Emma Timmins-Schiffman et al.   ISME Journal

An Alignment-Free “Metapeptide” Strategy for Metaproteomic Characterization of Microbiome Samples Using Shotgun Metagenomic Sequencing

(2016) Damon H. May et al.   JOURNAL OF PROTEOME RESEARCH

Proteomics and comparative genomics ofNitrososphaera viennensisreveal the core genome and adaptations of archaeal ammonia oxidizers

(2016) Melina Kerou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Delta-proteobacterial SAR324 group in hydrothermal plumes on the South Mid-Atlantic Ridge

(2016) Huiluo Cao et al.   Scientific Reports

Experimental Strategies for Functional Annotation and Metabolism Discovery: Targeted Screening of Solute Binding Proteins and Unbiased Panning of Metabolomes

(2015) Matthew W. Vetting et al.   BIOCHEMISTRY

Metaproteomics of aquatic microbial communities in a deep and stratified estuary

(2015) David Colatriano et al.   PROTEOMICS

Dilution limits dissolved organic carbon utilization in the deep ocean

(2015) J. M. Arrieta et al.   SCIENCE

Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea

(2015) Meng Li et al.   Nature Communications

Metaproteomic analysis of a winter to spring succession in coastal northwest Atlantic Ocean microbial plankton

(2014) Anna A Georges et al.   ISME Journal

Variability of the transporter gene complement in ammonia-oxidizing archaea

(2014) Pierre Offre et al.   TRENDS IN MICROBIOLOGY

Microbial iron uptake as a mechanism for dispersing iron from deep-sea hydrothermal vents

(2014) Meng Li et al.   Nature Communications

Novel Tripartite Aromatic Acid Transporter Essential for Terephthalate Uptake in Comamonas sp. Strain E6

(2013) Masaru Hosaka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantitative Assessment of In-solution Digestion Efficiency Identifies Optimal Protocols for Unbiased Protein Analysis

(2013) Ileana R. León et al.   MOLECULAR & CELLULAR PROTEOMICS

Microbial control of the dark end of the biological pump

(2013) Gerhard J. Herndl et al.   Nature Geoscience

Short-Read Assembly of Full-Length 16S Amplicons Reveals Bacterial Diversity in Subsurface Sediments

(2013) Christopher S. Miller et al.   PLoS One

Links between viruses and prokaryotes throughout the water column along a North Atlantic latitudinal transect

(2012) Daniele De Corte et al.   ISME Journal

Expression patterns reveal niche diversification in a marine microbial assemblage

(2012) Scott M Gifford et al.   ISME Journal

A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters

(2012) Timothy J Williams et al.   ISME Journal

Distribution and Functions of TonB-Dependent Transporters in Marine Bacteria and Environments: Implications for Dissolved Organic Matter Utilization

(2012) Kai Tang et al.   PLoS One

Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton

(2011) Elizabeth A Ottesen et al.   ISME Journal

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

(2011) Chris L Dupont et al.   ISME Journal

Evidence of prokaryotic metabolism on suspended particulate organic matter in the dark waters of the subtropical North Atlantic

(2011) Federico Baltar et al.   LIMNOLOGY AND OCEANOGRAPHY

Microbial oceanography of the dark ocean's pelagic realm

(2011) Javier Arístegui et al.   LIMNOLOGY AND OCEANOGRAPHY

Dissolved Organic Matter in the Ocean: A Controversy Stimulates New Insights

(2011) Dennis Hansell et al.   OCEANOGRAPHY

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Emerging concepts on microbial processes in the bathypelagic ocean – ecology, biogeochemistry, and genomics

(2010) Toshi Nagata et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

A structural classification of substrate-binding proteins

(2010) Ronnie P.-A. Berntsson et al.   FEBS LETTERS

Environmental proteomics of microbial plankton in a highly productive coastal upwelling system

(2010) Sarah M Sowell et al.   ISME Journal

Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction

(2010) Robert M Morris et al.   ISME Journal

Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean

(2010) Nianzhi Jiao et al.   NATURE REVIEWS MICROBIOLOGY

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

(2010) J. McCarren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Caught in a TRAP: substrate-binding proteins in secondary transport

(2010) Marcus Fischer et al.   TRENDS IN MICROBIOLOGY

Genes for transport and metabolism of spermidine in Ruegeria pomeroyi DSS-3 and other  marine bacteria

(2009) X Mou et al.   AQUATIC MICROBIAL ECOLOGY

Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon

(2009) Rachel S. Poretsky et al.   ENVIRONMENTAL MICROBIOLOGY

The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity

(2009) M. S. Schwalbach et al.   ENVIRONMENTAL MICROBIOLOGY

1.55 Å Structure of the Ectoine Binding Protein TeaA of the Osmoregulated TRAP-Transporter TeaABC fromHalomonas elongata†‡

(2008) Sonja I. Kuhlmann et al.   BIOCHEMISTRY

Introduction to “Understanding the Ocean's biological pump: Results from VERTIGO”

(2008) Ken O. Buesseler et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Abundant and diverse bacteria involved in DMSP degradation in marine surface waters

(2008) Erinn C. Howard et al.   ENVIRONMENTAL MICROBIOLOGY

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea

(2008) Sarah M Sowell et al.   ISME Journal

Structure, Function, and Evolution of Bacterial ATP-Binding Cassette Systems

(2008) A. L. Davidson et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

SAR11 marine bacteria require exogenous reduced sulphur for growth

(2008) H. James Tripp et al.   NATURE

New substrates for TonB-dependent transport: do we only see the ‘tip of the iceberg’?

(2008) Kristine Schauer et al.   TRENDS IN BIOCHEMICAL SCIENCES