Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria
出版年份 2017 全文链接
标题
Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria
作者
关键词
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出版物
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 114, Issue 43, Pages E9026-E9035
出版商
Proceedings of the National Academy of Sciences
发表日期
2017-10-11
DOI
10.1073/pnas.1705887114
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Mutation effects predicted from sequence co-variation
- (2017) Thomas A Hopf et al. NATURE BIOTECHNOLOGY
- Hitchhiking and epistasis give rise to cohort dynamics in adapting populations
- (2017) Sean W. Buskirk et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Polymorphisms, Chromosomal Rearrangements, and Mutator Phenotype Development during Experimental Evolution of Lactobacillus rhamnosus GG
- (2016) François P. Douillard et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Intrapopulation variability in mutator prevalence among urinary tract infection isolates of Escherichia coli
- (2016) A. Couce et al. CLINICAL MICROBIOLOGY AND INFECTION
- Links between Transcription, Environmental Adaptation and Gene Variability inEscherichia coli: Correlations between Gene Expression and Gene Variability Reflect Growth Efficiencies
- (2016) Jean-Paul Feugeas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Tempo and mode of genome evolution in a 50,000-generation experiment
- (2016) Olivier Tenaillon et al. NATURE
- Adaptation, Clonal Interference, and Frequency-Dependent Interactions in a Long-Term Evolution Experiment with Escherichia coli
- (2015) Rohan Maddamsetti et al. GENETICS
- Coevolutionary Landscape Inference and the Context-Dependence of Mutations in Beta-Lactamase TEM-1
- (2015) Matteo Figliuzzi et al. MOLECULAR BIOLOGY AND EVOLUTION
- Quantitative evolutionary dynamics using high-resolution lineage tracking
- (2015) Sasha F. Levy et al. NATURE
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Determinants of spontaneous mutation in the bacteriumEscherichia colias revealed by whole-genome sequencing
- (2015) Patricia L. Foster et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Recombinant transfer in the basic genome ofEscherichia coli
- (2015) Purushottam D. Dixit et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Sustained fitness gains and variability in fitness trajectories in the long-term evolution experiment withEscherichia coli
- (2015) Richard E. Lenski et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Origins and evolution of viruses of eukaryotes: The ultimate modularity
- (2015) Eugene V. Koonin et al. VIROLOGY
- Analysis of Bottlenecks in Experimental Models of Infection
- (2015) Sören Abel et al. PLoS Pathogens
- Adaptation, Clonal Interference, and Frequency-Dependent Interactions in a Long-Term Evolution Experiment with Escherichia coli
- (2015) Rohan Maddamsetti et al. GENETICS
- Adaptive synonymous mutations in an experimentally evolved Pseudomonas fluorescens population
- (2014) Susan F. Bailey et al. Nature Communications
- Metabolic Erosion Primarily Through Mutation Accumulation, and Not Tradeoffs, Drives Limited Evolution of Substrate Specificity in Escherichia coli
- (2014) Nicholas Leiby et al. PLOS BIOLOGY
- The First Steps of Adaptation of Escherichia coli to the Gut Are Dominated by Soft Sweeps
- (2014) João Barroso-Batista et al. PLoS Genetics
- Genetic Draft, Selective Interference, and Population Genetics of Rapid Adaptation
- (2013) Richard A. Neher Annual Review of Ecology Evolution and Systematics
- Synchronous Waves of Failed Soft Sweeps in the Laboratory: Remarkably Rampant Clonal Interference of Alleles at a Single Locus
- (2013) M.-C. Lee et al. GENETICS
- Small, Smaller, Smallest: The Origins and Evolution of Ancient Dual Symbioses in a Phloem-Feeding Insect
- (2013) Gordon M. Bennett et al. Genome Biology and Evolution
- Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations
- (2013) Gregory I. Lang et al. NATURE
- Genome dynamics during experimental evolution
- (2013) Jeffrey E. Barrick et al. NATURE REVIEWS GENETICS
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Improved contact prediction in proteins: Using pseudolikelihoods to infer Potts models
- (2013) Magnus Ekeberg et al. PHYSICAL REVIEW E
- Capturing the mutational landscape of the beta-lactamase TEM-1
- (2013) H. Jacquier et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Rapidly fluctuating environments constrain coevolutionary arms races by impeding selective sweeps
- (2013) E. Harrison et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Long-Term Dynamics of Adaptation in Asexual Populations
- (2013) M. J. Wiser et al. SCIENCE
- Extraordinary expansion of a Sorangium cellulosum genome from an alkaline milieu
- (2013) Kui Han et al. Scientific Reports
- Selection in a fluctuating environment leads to decreased genetic variation and facilitates the evolution of phenotypic plasticity
- (2012) L. R. HALLSSON et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing
- (2012) H. Lee et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load
- (2012) S. Wielgoss et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolution of the cancer genome
- (2012) Ondrej Podlaha et al. TRENDS IN GENETICS
- Emergent Neutrality in Adaptive Asexual Evolution
- (2011) Stephan Schiffels et al. GENETICS
- Bacterial hypermutation: clinical implications
- (2011) A. Jolivet-Gougeon et al. JOURNAL OF MEDICAL MICROBIOLOGY
- Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes
- (2011) Tami D Lieberman et al. NATURE GENETICS
- Extreme genome reduction in symbiotic bacteria
- (2011) John P. McCutcheon et al. NATURE REVIEWS MICROBIOLOGY
- Direct-coupling analysis of residue coevolution captures native contacts across many protein families
- (2011) F. Morcos et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Second-Order Selection for Evolvability in a Large Escherichia coli Population
- (2011) R. J. Woods et al. SCIENCE
- The spontaneous mutation frequencies of Prochlorococcus strains are commensurate with those of other bacteria
- (2011) Marcia S. Osburne et al. Environmental Microbiology Reports
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Wright and Fisher on Inbreeding and Random Drift
- (2010) J. F. Crow GENETICS
- Functional Convergence in Reduced Genomes of Bacterial Symbionts Spanning 200 My of Evolution
- (2010) John P. McCutcheon et al. Genome Biology and Evolution
- A method and server for predicting damaging missense mutations
- (2010) Ivan A Adzhubei et al. NATURE METHODS
- Evidence That Mutation Is Universally Biased towards AT in Bacteria
- (2010) Ruth Hershberg et al. PLoS Genetics
- Gene Amplification and Adaptive Evolution in Bacteria
- (2009) Dan I. Andersson et al. Annual Review of Genetics
- Prochlorococcus: Advantages and Limits of Minimalism
- (2009) Frédéric Partensky et al. Annual Review of Marine Science
- Identifying Genetic Determinants Needed to Establish a Human Gut Symbiont in Its Habitat
- (2009) Andrew L. Goodman et al. Cell Host & Microbe
- Reduced Effectiveness of Selection Caused by a Lack of Recombination
- (2009) Andrea J. Betancourt et al. CURRENT BIOLOGY
- Understanding the Differences between Genome Sequences of Escherichia coli B Strains REL606 and BL21(DE3) and Comparison of the E. coli B and K-12 Genomes
- (2009) F. William Studier et al. JOURNAL OF MOLECULAR BIOLOGY
- Update on the Keio collection of Escherichia coli single-gene deletion mutants
- (2009) Natsuko Yamamoto et al. Molecular Systems Biology
- Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
- (2009) Prateek Kumar et al. Nature Protocols
- Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution
- (2008) D. Allan Drummond et al. CELL
- Evidence for a human-specific Escherichia coli clone
- (2008) Olivier Clermont et al. ENVIRONMENTAL MICROBIOLOGY
- The Temporal Dynamics of Slightly Deleterious Mutations in Escherichia coli and Shigella spp.
- (2008) K. J. Balbi et al. MOLECULAR BIOLOGY AND EVOLUTION
- MmeI: a minimal Type II restriction-modification system that only modifies one DNA strand for host protection
- (2008) Richard D. Morgan et al. NUCLEIC ACIDS RESEARCH
- The Mosaic Genome of Anaeromyxobacter dehalogenans Strain 2CP-C Suggests an Aerobic Common Ancestor to the Delta-Proteobacteria
- (2008) Sara H. Thomas et al. PLoS One
- Whole-genome mutational biases in bacteria
- (2008) P. A. Lind et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Assessing the potential of mutational strategies to elicit new phenotypes in industrial strains
- (2008) D. Klein-Marcuschamer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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