Analysis of Bottlenecks in Experimental Models of Infection

Sequence tag–based analysis of microbial population dynamics

(2015) Sören Abel et al.   NATURE METHODS

Influenza A Virus Transmission Bottlenecks Are Defined by Infection Route and Recipient Host

(2014) Andrew Varble et al.   Cell Host & Microbe

Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data

(2014) Colin J. Worby et al.   PLoS Computational Biology

ARTIST: High-Resolution Genome-Wide Assessment of Fitness Using Transposon-Insertion Sequencing

(2014) Justin R. Pritchard et al.   PLoS Genetics

Independent Bottlenecks Characterize Colonization of Systemic Compartments and Gut Lymphoid Tissue by Salmonella

(2014) Chee Han Lim et al.   PLoS Pathogens

Intraspecies Competition for Niches in the Distal Gut Dictate Transmission during Persistent Salmonella Infection

(2014) Lilian H. Lam et al.   PLoS Pathogens

Tn-Seq Analysis of Vibrio cholerae Intestinal Colonization Reveals a Role for T6SS-Mediated Antibacterial Activity in the Host

(2013) Yang Fu et al.   Cell Host & Microbe

Within-Host Selection Is Limited by an Effective Population of Streptococcus pneumoniae during Nasopharyngeal Colonization

(2013) Yuan Li et al.   INFECTION AND IMMUNITY

Understanding Barriers to Borrelia burgdorferi Dissemination during Infection Using Massively Parallel Sequencing

(2013) Erin B. Troy et al.   INFECTION AND IMMUNITY

Lymph Node Colonization Dynamics after Oral Salmonella Typhimurium Infection in Mice

(2013) Patrick Kaiser et al.   PLoS Pathogens

Population Dynamics and Niche Distribution of Uropathogenic Escherichia coli during Acute and Chronic Urinary Tract Infection

(2011) Drew J. Schwartz et al.   INFECTION AND IMMUNITY

Hepatitis C Virus Transmission Bottlenecks Analyzed by Deep Sequencing

(2010) G. P. Wang et al.   JOURNAL OF VIROLOGY

Modelling within-Host Spatiotemporal Dynamics of Invasive Bacterial Disease

(2008) Andrew J Grant et al.   PLOS BIOLOGY

Large Bottleneck Size in Cauliflower Mosaic Virus Populations during Host Plant Colonization

(2008) Baptiste Monsion et al.   PLoS Pathogens