Massively parallel unsupervised single-particle cryo-EM data clustering via statistical manifold learning

Robust Neighborhood Preserving Projection by Nuclear/L2,1-Norm Regularization for Image Feature Extraction

(2017) Zhao Zhang et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

The development of cryo-EM into a mainstream structural biology technique

(2016) Eva Nogales   NATURE METHODS

Structural basis for dynamic regulation of the human 26S proteasome

(2016) Shuobing Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Directly reconstructing principal components of heterogeneous particles from cryo-EM images

(2015) Hemant D. Tagare et al.   JOURNAL OF STRUCTURAL BIOLOGY

Cryo-EM structure of the activated NAIP2-NLRC4 inflammasome reveals nucleated polymerization

(2015) L. Zhang et al.   SCIENCE

Covariance Matrix Estimation for the Cryo-EM Heterogeneity Problem

(2015) E. Katsevich et al.   SIAM Journal on Imaging Sciences

Rotationally invariant image representation for viewing direction classification in cryo-EM

(2014) Zhizhen Zhao et al.   JOURNAL OF STRUCTURAL BIOLOGY

Conformations of macromolecules and their complexes from heterogeneous datasets

(2014) P. Schwander et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Trajectories of the ribosome as a Brownian nanomachine

(2014) Ali Dashti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Xmipp 3.0: An improved software suite for image processing in electron microscopy

(2013) J.M. de la Rosa-Trevín et al.   JOURNAL OF STRUCTURAL BIOLOGY

Validation of Cryo-EM Structure of IP3R1 Channel

(2013) Stephen C. Murray et al.   STRUCTURE

Trace Ratio Optimization-Based Semi-Supervised Nonlinear Dimensionality Reduction for Marginal Manifold Visualization

(2012) Zhao Zhang et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

RELION: Implementation of a Bayesian approach to cryo-EM structure determination

(2012) Sjors H.W. Scheres   JOURNAL OF STRUCTURAL BIOLOGY

Multiscale natural moves refine macromolecules using single-particle electron microscopy projection images

(2012) J. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Iterative Stable Alignment and Clustering of 2D Transmission Electron Microscope Images

(2012) Zhengfan Yang et al.   STRUCTURE

M-Isomap: Orthogonal Constrained Marginal Isomap for Nonlinear Dimensionality Reduction

(2012) Zhao Zhang et al.   IEEE Transactions on Cybernetics

A Bayesian View on Cryo-EM Structure Determination

(2011) Sjors H.W. Scheres   JOURNAL OF MOLECULAR BIOLOGY

Viewing Angle Classification of Cryo-Electron Microscopy Images Using Eigenvectors

(2011) A. Singer et al.   SIAM Journal on Imaging Sciences

An adaptive Expectation–Maximization algorithm with GPU implementation for electron cryomicroscopy

(2010) Hemant D. Tagare et al.   JOURNAL OF STRUCTURAL BIOLOGY

A clustering approach to multireference alignment of single-particle projections in electron microscopy

(2010) C.O.S. Sorzano et al.   JOURNAL OF STRUCTURAL BIOLOGY

SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs

(2009) Tanvir R Shaikh et al.   Nature Protocols

Synchronized Submanifold Embedding for Person-Independent Pose Estimation and Beyond

(2008) Shuicheng Yan et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING