Age, gender and UV-exposition related effects on gene expression in in vivo aged short term cultivated human dermal fibroblasts

Phenotypic and functional changes in dermal primary fibroblasts isolated from intrinsically aged human skin

(2016) Cécilia Brun et al.   EXPERIMENTAL DERMATOLOGY

Role of Matrix Metalloproteinases in Photoaging and Photocarcinogenesis

(2016) Pavida Pittayapruek et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Gene‐specific correlation of RNA and protein levels in human cells and tissues

(2016) Fredrik Edfors et al.   Molecular Systems Biology

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

(2016) Nicholas J. Schurch et al.   RNA

Novel loci and pathways significantly associated with longevity

(2016) Yi Zeng et al.   Scientific Reports

Reduction of fibroblast size/mechanical force down-regulates TGF-β type II receptor: implications for human skin aging

(2015) Gary J. Fisher et al.   AGING CELL

rbamtools: an R interface to samtools enabling fast accumulative tabulation of splicing events over multiple RNA-seq samples

(2015) Wolfgang Kaisers et al.   BIOINFORMATICS

Cellular senescence in aging and age-related disease: from mechanisms to therapy

(2015) Bennett G Childs et al.   NATURE MEDICINE

Orchestrating high-throughput genomic analysis with Bioconductor

(2015) Wolfgang Huber et al.   NATURE METHODS

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

The human transcriptome across tissues and individuals

(2015) M. Mele et al.   SCIENCE

Structural determinants of Smad function in TGF-β signaling

(2015) Maria J. Macias et al.   TRENDS IN BIOCHEMICAL SCIENCES

The transcriptional landscape of age in human peripheral blood

(2015) Marjolein J. Peters et al.   Nature Communications

Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases

(2015) Jialiang Yang et al.   Scientific Reports

Oxidative exposure impairs TGF-β pathway via reduction of type II receptor and SMAD3 in human skin fibroblasts

(2014) Tianyuan He et al.   AGE

Sex differences in the human peripheral blood transcriptome

(2014) Rick Jansen et al.   BMC GENOMICS

Senescence and apoptosis: dueling or complementary cell fates?

(2014) B. G. Childs et al.   EMBO REPORTS

New insights in photoaging, UVA induced damage and skin types

(2014) Claire Battie et al.   EXPERIMENTAL DERMATOLOGY

Cellular senescence: from physiology to pathology

(2014) Daniel Muñoz-Espín et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Ensembl 2015

(2014) Fiona Cunningham et al.   NUCLEIC ACIDS RESEARCH

Identifying the genomic determinants of aging and longevity in human population studies: Progress and challenges

(2013) Joris Deelen et al.   BIOESSAYS

The Hallmarks of Aging

(2013) Carlos López-Otín et al.   CELL

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

Gene expression changes with age in skin, adipose tissue, blood and brain

(2013) Daniel Glass et al.   GENOME BIOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Aryl Hydrocarbon Receptor Repressor (AhRR) Function Revisited: Repression of CYP1 Activity in Human Skin Fibroblasts Is Not Related to AhRR Expression

(2012) Julia Tigges et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Microarray-based identification of age-dependent differences in gene expression of human dermal fibroblasts

(2012) Pim Dekker et al.   MECHANISMS OF AGEING AND DEVELOPMENT

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The place of genetics in ageing research

(2012) Nir Barzilai et al.   NATURE REVIEWS GENETICS

On the Programmed/Non-Programmed Nature of Ageing within the Life History

(2011) Thomas B.L. Kirkwood et al.   CURRENT BIOLOGY

Transcriptional Profiling of Human Liver Identifies Sex-Biased Genes Associated with Polygenic Dyslipidemia and Coronary Artery Disease

(2011) Yijing Zhang et al.   PLoS One

BioMart Central Portal: an open database network for the biological community

(2011) J. M. Guberman et al.   Database-The Journal of Biological Databases and Curation

The Senescence-Associated Secretory Phenotype: The Dark Side of Tumor Suppression

(2010) Jean-Philippe Coppé et al.   Annual Review of Pathology-Mechanisms of Disease

Genomic studies in ageing research: the need to integrate genetic and gene expression approaches

(2010) W. M. Passtoors et al.   JOURNAL OF INTERNAL MEDICINE

Inflammatory networks during cellular senescence: causes and consequences

(2010) Adam Freund et al.   TRENDS IN MOLECULAR MEDICINE

Meta-analysis of age-related gene expression profiles identifies common signatures of aging

(2009) João Pedro de Magalhães et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Reduced Expression of Connective Tissue Growth Factor (CTGF/CCN2) Mediates Collagen Loss in Chronologically Aged Human Skin

(2009) TaiHao Quan et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Senescence and life span

(2009) Peter J. Hornsby   PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY

Collagen Fragmentation Promotes Oxidative Stress and Elevates Matrix Metalloproteinase-1 in Fibroblasts in Aged Human Skin

(2008) Gary J. Fisher et al.   AMERICAN JOURNAL OF PATHOLOGY

Iron regulates phosphorylation of Smad1/5/8 and gene expression of Bmp6, Smad7, Id1, and Atoh8 in the mouse liver

(2008) L. Kautz et al.   BLOOD

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Aging Alters Functionally Human Dermal Papillary Fibroblasts but Not Reticular Fibroblasts: A New View of Skin Morphogenesis and Aging

(2008) Solène Mine et al.   PLoS One