Correlated 5-Hydroxymethylcytosine (5hmC) and Gene Expression Profiles Underpin Gene and Organ-Specific Epigenetic Regulation in Adult Mouse Brain and Liver
出版年份 2017 全文链接
标题
Correlated 5-Hydroxymethylcytosine (5hmC) and Gene Expression Profiles Underpin Gene and Organ-Specific Epigenetic Regulation in Adult Mouse Brain and Liver
作者
关键词
Gene expression, Cerebellum, DNA methylation, Hypothalamus, Thalamus, Liver, Hippocampus, Gene regulation
出版物
PLoS One
Volume 12, Issue 1, Pages e0170779
出版商
Public Library of Science (PLoS)
发表日期
2017-01-27
DOI
10.1371/journal.pone.0170779
参考文献
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- 5-Hydroxymethylcytosine expression is associated with poor survival in cervical squamous cell carcinoma
- (2016) Li-Ying Zhang et al. JAPANESE JOURNAL OF CLINICAL ONCOLOGY
- De novo DNA methylation drives 5hmC accumulation in mouse zygotes
- (2016) Rachel Amouroux et al. NATURE CELL BIOLOGY
- Changes of 5-hydroxymethylcytosine distribution during myeloid and lymphoid differentiation of CD34+ cells
- (2016) Xavier Tekpli et al. Epigenetics & Chromatin
- DNA hydroxymethylation controls cardiomyocyte gene expression in development and hypertrophy
- (2016) Carolina M. Greco et al. Nature Communications
- Biochemical reconstitution of TET1–TDG–BER-dependent active DNA demethylation reveals a highly coordinated mechanism
- (2016) Alain R. Weber et al. Nature Communications
- Loss of 5-Hydroxymethylcytosine Is an Independent Unfavorable Prognostic Factor for Esophageal Squamous Cell Carcinoma
- (2016) Xuejiao Shi et al. PLoS One
- Stable 5-Hydroxymethylcytosine (5hmC) Acquisition Marks Gene Activation During Chondrogenic Differentiation
- (2015) Sarah EB Taylor et al. JOURNAL OF BONE AND MINERAL RESEARCH
- Charting oxidized methylcytosines at base resolution
- (2015) Hao Wu et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Constitutive heterochromatin formation and transcription in mammals
- (2015) Nehmé Saksouk et al. Epigenetics & Chromatin
- 5-hydroxymethylcytosine in cancer: significance in diagnosis and therapy
- (2015) Aparna Vasanthakumar et al. Cancer Genetics
- Charting oxidized methylcytosines at base resolution
- (2015) Hao Wu et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- TET-catalyzed 5-hydroxymethylcytosine regulates gene expression in differentiating colonocytes and colon cancer
- (2015) Christopher G. Chapman et al. Scientific Reports
- Role of DNA Methylation in Modulating Transcription Factor Occupancy
- (2015) Matthew T. Maurano et al. Cell Reports
- The role of 5-hydroxymethylcytosine in human cancer
- (2014) Gerd P. Pfeifer et al. CELL AND TISSUE RESEARCH
- Tet3 and DNA Replication Mediate Demethylation of Both the Maternal and Paternal Genomes in Mouse Zygotes
- (2014) Li Shen et al. Cell Stem Cell
- Active and Passive Demethylation of Male and Female Pronuclear DNA in the Mammalian Zygote
- (2014) Fan Guo et al. Cell Stem Cell
- 5-Hydroxymethylcytosine is a predominantly stable DNA modification
- (2014) Martin Bachman et al. Nature Chemistry
- Dissecting the dynamic changes of 5-hydroxymethylcytosine in T-cell development and differentiation
- (2014) A. Tsagaratou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain
- (2014) Lu Wen et al. GENOME BIOLOGY
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Dynamic Readers for 5-(Hydroxy)Methylcytosine and Its Oxidized Derivatives
- (2013) Cornelia G. Spruijt et al. CELL
- Decreased 5-Hydroxymethylcytosine (5-hmC) is an Independent Poor Prognostic Factor in Gastric Cancer Patients
- (2013) Qi Yang et al. Journal of Biomedical Nanotechnology
- TET enzymes, TDG and the dynamics of DNA demethylation
- (2013) Rahul M. Kohli et al. NATURE
- Alteration of genic 5-hydroxymethylcytosine patterning in olfactory neurons correlates with changes in gene expression and cell identity
- (2013) Bradley M. Colquitt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dynamics of 5-Hydroxymethylcytosine and Chromatin Marks in Mammalian Neurogenesis
- (2013) Maria A. Hahn et al. Cell Reports
- Alterations of 5-Hydroxymethylcytosine in Human Cancers
- (2013) Christopher Mariani et al. Cancers
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- MeCP2 Binds to 5hmC Enriched within Active Genes and Accessible Chromatin in the Nervous System
- (2012) Marian Mellén et al. CELL
- Base-Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome
- (2012) Miao Yu et al. CELL
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Tet1 controls meiosis by regulating meiotic gene expression
- (2012) Shinpei Yamaguchi et al. NATURE
- Tumor development is associated with decrease of TET gene expression and 5-methylcytosine hydroxylation
- (2012) H Yang et al. ONCOGENE
- Reprogramming DNA methylation in the mammalian life cycle: building and breaking epigenetic barriers
- (2012) S. Seisenberger et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Germline DNA Demethylation Dynamics and Imprint Erasure Through 5-Hydroxymethylcytosine
- (2012) J. A. Hackett et al. SCIENCE
- Mbd3/NURD Complex Regulates Expression of 5-Hydroxymethylcytosine Marked Genes in Embryonic Stem Cells
- (2011) Ozlem Yildirim et al. CELL
- Lineage-specific distribution of high levels of genomic
- (2011) Alexey Ruzov et al. CELL RESEARCH
- Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells
- (2011) H. Wu et al. GENES & DEVELOPMENT
- Tissue type is a major modifier of the 5-hydroxymethylcytosine content of human genes
- (2011) C. E. Nestor et al. GENOME RESEARCH
- Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers
- (2011) A. A. Serandour et al. GENOME RESEARCH
- Thymine DNA Glycosylase Can Rapidly Excise 5-Formylcytosine and 5-Carboxylcytosine
- (2011) Atanu Maiti et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes
- (2011) Tian-Peng Gu et al. NATURE
- 5-hmC–mediated epigenetic dynamics during postnatal neurodevelopment and aging
- (2011) Keith E Szulwach et al. NATURE NEUROSCIENCE
- Genomic mapping of 5-hydroxymethylcytosine in the human brain
- (2011) Seung-Gi Jin et al. NUCLEIC ACIDS RESEARCH
- Recognition of 5-Hydroxymethylcytosine by the Uhrf1 SRA Domain
- (2011) Carina Frauer et al. PLoS One
- Integrating 5-Hydroxymethylcytosine into the Epigenomic Landscape of Human Embryonic Stem Cells
- (2011) Keith E. Szulwach et al. PLoS Genetics
- Quantification of the Sixth DNA Base Hydroxymethylcytosine in the Brain
- (2010) Martin Münzel et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Towards a knowledge-based Human Protein Atlas
- (2010) Mathias Uhlen et al. NATURE BIOTECHNOLOGY
- Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine
- (2010) Chun-Xiao Song et al. NATURE BIOTECHNOLOGY
- The Behaviour of 5-Hydroxymethylcytosine in Bisulfite Sequencing
- (2010) Yun Huang et al. PLoS One
- Tissue Distribution of 5-Hydroxymethylcytosine and Search for Active Demethylation Intermediates
- (2010) Daniel Globisch et al. PLoS One
- A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
- (2009) Chongzhi Zang et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Linking DNA methylation and histone modification: patterns and paradigms
- (2009) Howard Cedar et al. NATURE REVIEWS GENETICS
- The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain
- (2009) S. Kriaucionis et al. SCIENCE
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