Dancing in the dark: darkness as a signal in plants

Light-Mediated Hormonal Regulation of Plant Growth and Development

(2016) Mieke de Wit et al.   Annual Review of Plant Biology

Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light

(2016) Ullas V. Pedmale et al.   CELL

Photoreceptor crosstalk in shade avoidance

(2016) Donald P Fraser et al.   CURRENT OPINION IN PLANT BIOLOGY

Corrigendum: The epidermis coordinates auxin-induced stem growth in response to shade

(2016) Carl Procko et al.   GENES & DEVELOPMENT

ArabidopsisSAURs are critical for differential light regulation of the development of various organs

(2016) Ning Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular convergence of clock and photosensory pathways through PIF3–TOC1 interaction and co-occupancy of target promoters

(2016) Judit Soy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BBX21, anArabidopsisB-box protein, directly activatesHY5and is targeted by COP1 for 26S proteasome-mediated degradation

(2016) Dongqing Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phytochromes function as thermosensors in Arabidopsis

(2016) Jae-Hoon Jung et al.   SCIENCE

The Plant Circadian Clock: From a Simple Timekeeper to a Complex Developmental Manager

(2016) Sabrina E. Sanchez et al.   Cold Spring Harbor Perspectives in Biology

TOC1–PIF4 interaction mediates the circadian gating of thermoresponsive growth in Arabidopsis

(2016) Jia-Ying Zhu et al.   Nature Communications

Phytochrome and retrograde signalling pathways converge to antagonistically regulate a light-induced transcriptional network

(2016) Guiomar Martín et al.   Nature Communications

PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis

(2016) He Huang et al.   eLife

Molecular and genetic control of plant thermomorphogenesis

(2016) Marcel Quint et al.   Nature Plants

A Hierarchical Multi-oscillator Network Orchestrates the Arabidopsis Circadian System

(2015) Nozomu Takahashi et al.   CELL

Integration of Light and Photoperiodic Signaling in Transcriptional Nuclear Foci

(2015) Eirini Kaiserli et al.   DEVELOPMENTAL CELL

Identification of Evening Complex Associated Proteins inArabidopsisby Affinity Purification and Mass Spectrometry

(2015) He Huang et al.   MOLECULAR & CELLULAR PROTEOMICS

Light-Activated Phytochrome A and B Interact with Members of the SPA Family to Promote Photomorphogenesis in Arabidopsis by Reorganizing the COP1/SPA Complex

(2015) David J. Sheerin et al.   PLANT CELL

Phytotyping4D: a light-field imaging system for non-invasive and accurate monitoring of spatio-temporal plant growth

(2015) Federico Apelt et al.   PLANT JOURNAL

Quantifying Protein Synthesis and Degradation in Arabidopsis by Dynamic13CO2Labeling and Analysis of Enrichment in Individual Amino Acids in Their Free Pools and in Protein

(2015) Hirofumi Ishihara et al.   PLANT PHYSIOLOGY

Light signaling controls nuclear architecture reorganization during seedling establishment

(2015) Clara Bourbousse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CUL4 forms an E3 ligase with COP1 and SPA to promote light-induced degradation of PIF1

(2015) Ling Zhu et al.   Nature Communications

Shade Avoidance Components and Pathways in Adult Plants Revealed by Phenotypic Profiling

(2015) Kazunari Nozue et al.   PLoS Genetics

Chloroplast Biogenesis-Associated Nuclear Genes: Control by Plastid Signals Evolved Prior to Their Regulation as Part of Photomorphogenesis

(2015) Alison C. Hills et al.   Frontiers in Plant Science

Sucrose Metabolism: Gateway to Diverse Carbon Use and Sugar Signaling

(2014) Yong-Ling Ruan   Annual Review of Plant Biology

PIF1 promotes phytochrome-regulated growth under photoperiodic conditions in Arabidopsis together with PIF3, PIF4, and PIF5

(2014) Judit Soy et al.   JOURNAL OF EXPERIMENTAL BOTANY

Combinatorial Complexity in a Transcriptionally Centered Signaling Hub in Arabidopsis

(2014) Anne Pfeiffer et al.   Molecular Plant

Plant Flavoprotein Photoreceptors

(2014) J. M. Christie et al.   PLANT AND CELL PHYSIOLOGY

Arabidopsis Phytochrome A Directly Targets Numerous Promoters for Individualized Modulation of Genes in a Wide Range of Pathways

(2014) F. Chen et al.   PLANT CELL

Arabidopsis DE-ETIOLATED1 Represses Photomorphogenesis by Positively Regulating Phytochrome-Interacting Factors in the Dark

(2014) J. Dong et al.   PLANT CELL

PHYTOCHROME INTERACTING FACTOR1 Enhances the E3 Ligase Activity of CONSTITUTIVE PHOTOMORPHOGENIC1 to Synergistically Repress Photomorphogenesis in Arabidopsis

(2014) X. Xu et al.   PLANT CELL

Photobody Localization of Phytochrome B Is Tightly Correlated with Prolonged and Light-Dependent Inhibition of Hypocotyl Elongation in the Dark

(2014) E. K. Van Buskirk et al.   PLANT PHYSIOLOGY

Rapid Decline in Nuclear COSTITUTIVE PHOTOMORPHOGENESIS1 Abundance Anticipates the Stabilization of Its Target ELONGATED HYPOCOTYL5 in the Light

(2014) M. Pacin et al.   PLANT PHYSIOLOGY

Crystal structure of the photosensing module from a red/far-red light-absorbing plant phytochrome

(2014) E. S. Burgie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The COP9 Signalosome Converts Temporal Hormone Signaling to Spatial Restriction on Neural Competence

(2014) Yi-Chun Huang et al.   PLoS Genetics

Shedding light on ethylene metabolism in higher plants

(2014) Maria A. Rodrigues et al.   Frontiers in Plant Science

Next-Generation Sequencing of Genomic DNA Fragments Bound to a Transcription Factor in Vitro Reveals Its Regulatory Potential

(2014) Yukio Kurihara et al.   Genes

The F-box protein ZEITLUPE controls stability and nucleocytoplasmic partitioning of GIGANTEA

(2013) Jeongsik Kim et al.   DEVELOPMENT

Arabidopsis Coordinates the Diurnal Regulation of Carbon Allocation and Growth across a Wide Range of Photoperiods

(2013) Ronan Sulpice et al.   Molecular Plant

Photosynthetic entrainment of the Arabidopsis thaliana circadian clock

(2013) Michael J. Haydon et al.   NATURE

No Time for Spruce: Rapid Dampening of Circadian Rhythms in Picea abies (L. Karst)

(2013) Niclas Gyllenstrand et al.   PLANT AND CELL PHYSIOLOGY

Phosphorylation of Phytochrome B Inhibits Light-Induced Signaling via Accelerated Dark Reversion in Arabidopsis

(2013) M. Medzihradszky et al.   PLANT CELL

Antagonistic Basic Helix-Loop-Helix/bZIP Transcription Factors Form Transcriptional Modules That Integrate Light and Reactive Oxygen Species Signaling inArabidopsis

(2013) Dongqin Chen et al.   PLANT CELL

Diurnal Changes of Polysome Loading Track Sucrose Content in the Rosette of Wild-Type Arabidopsis and the Starchless pgm Mutant

(2013) S. K. Pal et al.   PLANT PHYSIOLOGY

Wheels within wheels: the plant circadian system

(2013) Polly Yingshan Hsu et al.   TRENDS IN PLANT SCIENCE

A Quartet of PIF bHLH Factors Provides a Transcriptionally Centered Signaling Hub That Regulates Seedling Morphogenesis through Differential Expression-Patterning of Shared Target Genes in Arabidopsis

(2013) Yu Zhang et al.   PLoS Genetics

Hormonal Interactions in the Regulation of Plant Development

(2012) Marleen Vanstraelen et al.   Annual Review of Cell and Developmental Biology

Starch turnover: pathways, regulation and role in growth

(2012) Mark Stitt et al.   CURRENT OPINION IN PLANT BIOLOGY

Insight into the redox regulation of the phosphoglucan phosphatase SEX4 involved in starch degradation

(2012) Dylan M. Silver et al.   FEBS Journal

Dynamic Antagonism between Phytochromes and PIF Family Basic Helix-Loop-Helix Factors Induces Selective Reciprocal Responses to Light and Shade in a Rapidly Responsive Transcriptional Network inArabidopsis

(2012) Pablo Leivar et al.   PLANT CELL

Inactivation of thioredoxinf1 leads to decreased light activation of ADP-glucose pyrophosphorylase and altered diurnal starch turnover in leaves ofArabidopsisplants

(2012) INA THORMÄHLEN et al.   PLANT CELL AND ENVIRONMENT

The COP9 Signalosome: Its Regulation of Cullin-Based E3 Ubiquitin Ligases and Role in Photomorphogenesis

(2012) C. D. Nezames et al.   PLANT PHYSIOLOGY

CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses

(2012) A. G. Lai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator

(2012) W. Huang et al.   SCIENCE

Leaf size control: complex coordination of cell division and expansion

(2012) Nathalie Gonzalez et al.   TRENDS IN PLANT SCIENCE

The photomorphogenic repressors COP1 and DET1: 20 years later

(2012) On Sun Lau et al.   TRENDS IN PLANT SCIENCE

Brassinosteroid Signaling Network and Regulation of Photomorphogenesis

(2011) Zhi-Yong Wang et al.   Annual Review of Genetics

Phytochrome interacting factors (PIFs) are essential regulators for sucrose-induced hypocotyl elongation in Arabidopsis

(2011) Zhongjuan Liu et al.   JOURNAL OF PLANT PHYSIOLOGY

Interaction of Arabidopsis DET1 with CCA1 and LHY in Mediating Transcriptional Repression in the Plant Circadian Clock

(2011) On Sun Lau et al.   MOLECULAR CELL

The ELF4–ELF3–LUX complex links the circadian clock to diurnal control of hypocotyl growth

(2011) Dmitri A. Nusinow et al.   NATURE

Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis

(2011) Gang Li et al.   NATURE CELL BIOLOGY

Functional Profiling Identifies Genes Involved in Organ-Specific Branches of the PIF3 Regulatory Network inArabidopsis

(2011) Maria Sentandreu et al.   PLANT CELL

The Phosphoglucan Phosphatase Like Sex Four2 Dephosphorylates Starch at the C3-Position inArabidopsis

(2011) Diana Santelia et al.   PLANT CELL

Control of Leaf Expansion: A Developmental Switch from Metabolics to Hydraulics

(2011) F. Pantin et al.   PLANT PHYSIOLOGY

Photobodies in Light Signaling

(2011) E. K. Van Buskirk et al.   PLANT PHYSIOLOGY

COP1-Mediated Degradation of BBX22/LZF1 Optimizes Seedling Development in Arabidopsis

(2011) C.-S. J. Chang et al.   PLANT PHYSIOLOGY

PIF Genes Mediate the Effect of Sucrose on Seedling Growth Dynamics

(2011) Jodi L. Stewart et al.   PLoS One

The circadian oscillator gene GIGANTEA mediates a long-term response of the Arabidopsis thaliana circadian clock to sucrose

(2011) N. Dalchau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phytochrome signaling mechanisms and the control of plant development

(2011) Meng Chen et al.   TRENDS IN CELL BIOLOGY

Plants under continuous light

(2011) Aaron I. Velez-Ramirez et al.   TRENDS IN PLANT SCIENCE

Arabidopsis HEMERA/pTAC12 Initiates Photomorphogenesis by Phytochromes

(2010) Meng Chen et al.   CELL

Integration of Light- and Brassinosteroid-Signaling Pathways by a GATA Transcription Factor in Arabidopsis

(2010) Xiao-Min Luo et al.   DEVELOPMENTAL CELL

Diel time-courses of leaf growth in monocot and dicot species: endogenous rhythms and temperature effects

(2010) Richard Poiré et al.   JOURNAL OF EXPERIMENTAL BOTANY

Arabidopsis PHYTOCHROME INTERACTING FACTOR Proteins Promote Phytochrome B Polyubiquitination by COP1 E3 Ligase in the Nucleus

(2010) I.-C. Jang et al.   PLANT CELL

Genome-wide mapping of the HY5-mediated genenetworks in Arabidopsis that involve both transcriptional and post-transcriptional regulation

(2010) Huiyong Zhang et al.   PLANT JOURNAL

Circadian control of carbohydrate availability for growth in Arabidopsis plants at night

(2010) A. Graf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chlorophyll biosynthesis: spotlight on protochlorophyllide reduction

(2010) Christiane Reinbothe et al.   TRENDS IN PLANT SCIENCE

PIFs: pivotal components in a cellular signaling hub

(2010) Pablo Leivar et al.   TRENDS IN PLANT SCIENCE

Entrainment of the Arabidopsis Circadian Clock

(2009) Matthew A. Jones   JOURNAL OF PLANT BIOLOGY

The Circadian Clock Regulates the Photoperiodic Response of Hypocotyl Elongation through a Coincidence Mechanism in Arabidopsis thaliana

(2009) Yusuke Niwa et al.   PLANT AND CELL PHYSIOLOGY

A Putative Phosphatase, LSF1, Is Required for Normal Starch Turnover in Arabidopsis Leaves

(2009) S. Comparot-Moss et al.   PLANT PHYSIOLOGY

NTRC links built-in thioredoxin to light and sucrose in regulating starch synthesis in chloroplasts and amyloplasts

(2009) J. Michalska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Higher plants use LOV to perceive blue light

(2008) Emilie Demarsy et al.   CURRENT OPINION IN PLANT BIOLOGY

Post-translational Regulation of theArabidopsisCircadian Clock through Selective Proteolysis and Phosphorylation of Pseudo-response Regulator Proteins

(2008) Sumire Fujiwara et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

COP1 and ELF3 Control Circadian Function and Photoperiodic Flowering by Regulating GI Stability

(2008) Jae-Woong Yu et al.   MOLECULAR CELL

LZF1/SALT TOLERANCE HOMOLOG3, an Arabidopsis B-Box Protein Involved in Light-Dependent Development and Gene Expression, Undergoes COP1-Mediated Ubiquitination

(2008) S. Datta et al.   PLANT CELL

The Arabidopsis Phytochrome-Interacting Factor PIF7, Together with PIF3 and PIF4, Regulates Responses to Prolonged Red Light by Modulating phyB Levels

(2008) P. Leivar et al.   PLANT CELL

Light-Induced Phosphorylation and Degradation of the Negative Regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis Depend upon Its Direct Physical Interactions with Photoactivated Phytochromes

(2008) H. Shen et al.   PLANT CELL

 -AMYLASE4, a Noncatalytic Protein Required for Starch Breakdown, Acts Upstream of Three Active  -Amylases in Arabidopsis Chloroplasts

(2008) D. C. Fulton et al.   PLANT CELL

CUL1 regulates TOC1 protein stability in the Arabidopsis circadian clock

(2008) Frank Harmon et al.   PLANT JOURNAL

Circadian Timekeeping during Early Arabidopsis Development

(2008) P. A. Salome et al.   PLANT PHYSIOLOGY

Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules

(2008) Todd P. Michael et al.   PLoS Genetics

Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development

(2008) Michael F Covington et al.   GENOME BIOLOGY

The Clock Protein CCA1 and the bZIP Transcription Factor HY5 Physically Interact to Regulate Gene Expression in Arabidopsis

(2007) Christos Andronis et al.   Molecular Plant