Phytochrome and retrograde signalling pathways converge to antagonistically regulate a light-induced transcriptional network

Combinatorial Complexity in a Transcriptionally Centered Signaling Hub in Arabidopsis

(2014) Anne Pfeiffer et al.   Molecular Plant

Age-Triggered and Dark-Induced Leaf Senescence Require the bHLH Transcription Factors PIF3, 4, and 5

(2014) Yi Song et al.   Molecular Plant

Influence of plastids on light signalling and development

(2014) R. M. Larkin   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

PIFs: Systems Integrators in Plant Development

(2014) P. Leivar et al.   PLANT CELL

The Shade Avoidance Syndrome in Arabidopsis: The Antagonistic Role of Phytochrome A and B Differentiates Vegetation Proximity and Canopy Shade

(2014) Jaime F. Martínez-García et al.   PLoS One

A mutually assured destruction mechanism attenuates light signaling in Arabidopsis

(2014) W. Ni et al.   SCIENCE

Intracellular Signaling from Plastid to Nucleus

(2013) Wei Chi et al.   Annual Review of Plant Biology

Phytochrome-induced SIG2 expression contributes to photoregulation of phytochrome signalling and photomorphogenesis in Arabidopsis thaliana

(2013) Sookyung Oh et al.   JOURNAL OF EXPERIMENTAL BOTANY

Light intensity-dependent retrograde signalling in higher plants

(2013) Magdalena Szechyńska-Hebda et al.   JOURNAL OF PLANT PHYSIOLOGY

Biogenesis and homeostasis of chloroplasts and other plastids

(2013) Paul Jarvis et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

ABI4 Regulates Primary Seed Dormancy by Regulating the Biogenesis of Abscisic Acid and Gibberellins in Arabidopsis

(2013) Kai Shu et al.   PLoS Genetics

A Quartet of PIF bHLH Factors Provides a Transcriptionally Centered Signaling Hub That Regulates Seedling Morphogenesis through Differential Expression-Patterning of Shared Target Genes in Arabidopsis

(2013) Yu Zhang et al.   PLoS Genetics

Systemic and Local Responses to Repeated HL Stress-Induced Retrograde Signaling in Arabidopsis

(2013) Matthew J. Gordon et al.   Frontiers in Plant Science

Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses

(2012) Eunkyoo Oh et al.   NATURE CELL BIOLOGY

Sigma factor-mediated plastid retrograde signals control nuclear gene expression

(2012) Jesse D. Woodson et al.   PLANT JOURNAL

Plastids Are Major Regulators of Light Signaling in Arabidopsis

(2012) M. E. Ruckle et al.   PLANT PHYSIOLOGY

Heme Synthesis by Plastid Ferrochelatase I Regulates Nuclear Gene Expression in Plants

(2011) Jesse D. Woodson et al.   CURRENT BIOLOGY

Functional Profiling Identifies Genes Involved in Organ-Specific Branches of the PIF3 Regulatory Network inArabidopsis

(2011) Maria Sentandreu et al.   PLANT CELL

PIF Genes Mediate the Effect of Sucrose on Seedling Growth Dynamics

(2011) Jodi L. Stewart et al.   PLoS One

The Arabidopsis plastid-signalling mutant gun1 (genomes uncoupled1) shows altered sensitivity to sucrose and abscisic acid and alterations in early seedling development

(2010) A. Cottage et al.   JOURNAL OF EXPERIMENTAL BOTANY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Plastid signals that affect photomorphogenesis in Arabidopsis thaliana are dependent on GENOMES UNCOUPLED 1 and cryptochrome 1

(2009) Michael E. Ruckle et al.   NEW PHYTOLOGIST

Characterization of soldat8, a Suppressor of Singlet Oxygen-Induced Cell Death in Arabidopsis Seedlings

(2009) N. S. Coll et al.   PLANT AND CELL PHYSIOLOGY

GLK Transcription Factors Coordinate Expression of the Photosynthetic Apparatus in Arabidopsis

(2009) M. T. Waters et al.   PLANT CELL

Definition of Early Transcriptional Circuitry Involved in Light-Induced Reversal of PIF-Imposed Repression of Photomorphogenesis in Young Arabidopsis Seedlings

(2009) P. Leivar et al.   PLANT CELL

Coordination of Plastid Protein Import and Nuclear Gene Expression by Plastid-to-Nucleus Retrograde Signaling

(2009) T. Kakizaki et al.   PLANT PHYSIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Seed Storage Oil Mobilization

(2008) Ian A. Graham   Annual Review of Plant Biology

Multiple Phytochrome-Interacting bHLH Transcription Factors Repress Premature Seedling Photomorphogenesis in Darkness

(2008) Pablo Leivar et al.   CURRENT BIOLOGY

The Arabidopsis Phytochrome-Interacting Factor PIF7, Together with PIF3 and PIF4, Regulates Responses to Prolonged Red Light by Modulating phyB Levels

(2008) P. Leivar et al.   PLANT CELL

GLK transcription factors regulate chloroplast development in a cell-autonomous manner

(2008) Mark T. Waters et al.   PLANT JOURNAL

Plastid signalling to the nucleus and beyond

(2008) Barry J. Pogson et al.   TRENDS IN PLANT SCIENCE