The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces
出版年份 2017 全文链接
标题
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume 46, Issue D1, Pages D477-D485
出版商
Oxford University Press (OUP)
发表日期
2017-10-28
DOI
10.1093/nar/gkx1019
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
- (2017) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- TnT: a set of libraries for visualizing trees and track-based annotations for the web
- (2016) Miguel Pignatelli BIOINFORMATICS
- Phylo.io: Interactive Viewing and Comparison of Large Phylogenetic Trees on the Web
- (2016) Oscar Robinson et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genenames.org: the HGNC and VGNC resources in 2017
- (2016) Bethan Yates et al. NUCLEIC ACIDS RESEARCH
- UniProt: the universal protein knowledgebase
- (2016) NUCLEIC ACIDS RESEARCH
- Homoeologs: What Are They and How Do We Infer Them?
- (2016) Natasha M. Glover et al. TRENDS IN PLANT SCIENCE
- The Orthology Ontology: development and applications
- (2016) Jesualdo Tomás Fernández-Breis et al. Journal of Biomedical Semantics
- eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
- (2015) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- Gene3D: expanding the utility of domain assignments
- (2015) Su Datt Lam et al. NUCLEIC ACIDS RESEARCH
- Systematic humanization of yeast genes reveals conserved functions and genetic modularity
- (2015) A. H. Kachroo et al. SCIENCE
- Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference
- (2015) Ge Tan et al. SYSTEMATIC BIOLOGY
- Big data and other challenges in the quest for orthologs
- (2014) E. L. L. Sonnhammer et al. BIOINFORMATICS
- OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software
- (2014) Evgenia V. Kriventseva et al. NUCLEIC ACIDS RESEARCH
- The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements
- (2014) Adrian M. Altenhoff et al. NUCLEIC ACIDS RESEARCH
- PLAZA 3.0: an access point for plant comparative genomics
- (2014) Sebastian Proost et al. NUCLEIC ACIDS RESEARCH
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Functional and evolutionary implications of gene orthology
- (2013) Toni Gabaldón et al. NATURE REVIEWS GENETICS
- PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome
- (2013) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- Inferring Hierarchical Orthologous Groups from Orthologous Gene Pairs
- (2013) Adrian M. Altenhoff et al. PLoS One
- CAFA and the Open World of protein function predictions
- (2013) Christophe Dessimoz et al. TRENDS IN GENETICS
- MBGD update 2013: the microbial genome database for exploring the diversity of microbial world
- (2012) Ikuo Uchiyama et al. NUCLEIC ACIDS RESEARCH
- Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees
- (2011) B. Boeckmann et al. BRIEFINGS IN BIOINFORMATICS
- Letter to the Editor: SeqXML and OrthoXML: standards for sequence and orthology information
- (2011) T. Schmitt et al. BRIEFINGS IN BIOINFORMATICS
- BioStar: An Online Question & Answer Resource for the Bioinformatics Community
- (2011) Laurence D. Parnell et al. PLoS Computational Biology
- OMA 2011: orthology inference among 1000 complete genomes
- (2010) A. M. Altenhoff et al. NUCLEIC ACIDS RESEARCH
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
- (2008) A. J. Vilella et al. GENOME RESEARCH
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