FireProt: web server for automated design of thermostable proteins

EASE-MM: Sequence-Based Prediction of Mutation-Induced Stability Changes with Feature-Based Multiple Models

(2016) Lukas Folkman et al.   JOURNAL OF MOLECULAR BIOLOGY

Automated Structure- and Sequence-Based Design of Proteins for High Bacterial Expression and Stability

(2016) Adi Goldenzweig et al.   MOLECULAR CELL

HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering

(2016) Jaroslav Bendl et al.   NUCLEIC ACIDS RESEARCH

Predicting protein thermal stability changes upon point mutations using statistical potentials: Introducing HoTMuSiC

(2016) Fabrizio Pucci et al.   Scientific Reports

FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants

(2015) David Bednar et al.   PLoS Computational Biology

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches

(2014) B. E. Suzek et al.   BIOINFORMATICS

Computational Library Design for Increasing Haloalkane Dehalogenase Stability

(2014) Robert J. Floor et al.   CHEMBIOCHEM

mCSM: predicting the effects of mutations in proteins using graph-based signatures

(2013) Douglas E. V. Pires et al.   BIOINFORMATICS

Stabilizing biocatalysts

(2013) Andreas S. Bommarius et al.   CHEMICAL SOCIETY REVIEWS

Structure- and sequence-analysis inspired engineering of proteins for enhanced thermostability

(2013) Hein J Wijma et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Stabilizing Proteins from Sequence Statistics: The Interplay of Conservation and Correlation in Triosephosphate Isomerase Stability

(2012) Brandon J. Sullivan et al.   JOURNAL OF MOLECULAR BIOLOGY

Correlation between thermostability and stability of glycosidases in ionic liquid

(2011) Salim Ferdjani et al.   BIOTECHNOLOGY LETTERS

Enhancing the Thermal Robustness of an Enzyme by Directed Evolution: Least Favorable Starting Points and Inferior Mutants Can Map Superior Evolutionary Pathways

(2011) Yosephine Gumulya et al.   CHEMBIOCHEM

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Role of conformational sampling in computing mutation-induced changes in protein structure and stability

(2010) Elizabeth H. Kellogg et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A new method for revealing correlated mutations under the structural and functional constraints in proteins

(2009) Byung-Chul Lee et al.   BIOINFORMATICS

Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0

(2009) Yves Dehouck et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Thermostable Variants of Cocaine Esterase for Long-Time Protection against Cocaine Toxicity

(2008) D. Gao et al.   MOLECULAR PHARMACOLOGY

Engineering proteins with tunable thermodynamic and kinetic stabilities

(2007) Angel L. Pey et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS