Hydroxyl-radical footprinting combined with molecular modeling identifies unique features of DNA conformation and nucleosome positioning
出版年份 2017 全文链接
标题
Hydroxyl-radical footprinting combined with molecular modeling identifies unique features of DNA conformation and nucleosome positioning
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume 45, Issue 16, Pages 9229-9243
出版商
Oxford University Press (OUP)
发表日期
2017-07-06
DOI
10.1093/nar/gkx616
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions
- (2016) Alexey K. Shaytan et al. JOURNAL OF MOLECULAR BIOLOGY
- HistoneDB 2.0: a histone database with variants—an integrated resource to explore histones and their variants
- (2016) Eli J. Draizen et al. Database-The Journal of Biological Databases and Curation
- Rapid Deamination of Cyclobutane Pyrimidine Dimer Photoproducts at TCG Sites in a Translationally and Rotationally Positioned Nucleosomein Vivo
- (2015) Vincent J. Cannistraro et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Structural analysis of nucleosomal barrier to transcription
- (2015) Daria A. Gaykalova et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Shearing of the CENP-A dimerization interface mediates plasticity in the octameric centromeric nucleosome
- (2015) David Winogradoff et al. Scientific Reports
- Pioneer transcription factors in cell reprogramming
- (2014) Makiko Iwafuchi-Doi et al. GENES & DEVELOPMENT
- DNA Damage by Histone Radicals in Nucleosome Core Particles
- (2014) Chuanzheng Zhou et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Rotational positioning of nucleosomes facilitates selective binding of p53 to response elements associated with cell cycle arrest
- (2013) F. Cui et al. NUCLEIC ACIDS RESEARCH
- Nucleosome Remodeling and Epigenetics
- (2013) P. B. Becker et al. Cold Spring Harbor Perspectives in Biology
- Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles
- (2012) Robert B. Best et al. Journal of Chemical Theory and Computation
- NIH Image to ImageJ: 25 years of image analysis
- (2012) Caroline A Schneider et al. NATURE METHODS
- New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?
- (2012) Karolin Luger et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- A Map of Minor Groove Shape and Electrostatic Potential from Hydroxyl Radical Cleavage Patterns of DNA
- (2011) Eric P. Bishop et al. ACS Chemical Biology
- OPERating ON Chromatin, a Colorful Language where Context Matters
- (2011) Kathryn E. Gardner et al. JOURNAL OF MOLECULAR BIOLOGY
- Nonhistone Scm3 Binds to AT-Rich DNA to Organize Atypical Centromeric Nucleosome of Budding Yeast
- (2011) Hua Xiao et al. MOLECULAR CELL
- Crystal structure of the human centromeric nucleosome containing CENP-A
- (2011) Hiroaki Tachiwana et al. NATURE
- The centromeric nucleosome of budding yeast is perfectly positioned and covers the entire centromere
- (2011) H. A. Cole et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Nucleosome structural studies
- (2010) Song Tan et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Crystal Structures of Nucleosome Core Particles Containing the ‘601’ Strong Positioning Sequence
- (2010) Dileep Vasudevan et al. JOURNAL OF MOLECULAR BIOLOGY
- Single-base resolution mapping of H1-nucleosome interactions and 3D organization of the nucleosome
- (2010) S. H. Syed et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structural Insight into the Sequence Dependence of Nucleosome Positioning
- (2010) Bin Wu et al. STRUCTURE
- Major Evolutionary Transitions in Centromere Complexity
- (2009) Harmit S. Malik et al. CELL
- Using DNA mechanics to predict in vitro nucleosome positions and formation energies
- (2009) Alexandre V. Morozov et al. NUCLEIC ACIDS RESEARCH
- The unique structure of A-tracts and intrinsic DNA bending
- (2009) Tali E. Haran et al. QUARTERLY REVIEWS OF BIOPHYSICS
- A 1,2-d(GpG) Cisplatin Intrastrand Cross-Link Influences the Rotational and Translational Setting of DNA in Nucleosomes
- (2008) Matthias Ober et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Footprinting protein–DNA complexes using the hydroxyl radical
- (2008) Swapan S Jain et al. Nature Protocols
- 3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures
- (2008) Xiang-Jun Lu et al. Nature Protocols
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started