Rapid Deamination of Cyclobutane Pyrimidine Dimer Photoproducts at TCG Sites in a Translationally and Rotationally Positioned Nucleosomein Vivo

Remarkable induction of UV-signature mutations at the 3′-cytosine of dipyrimidine sites except at 5′-TCG-3′ in the UVB-exposed skin epidermis of xeroderma pigmentosum variant model mice

(2014) Hironobu Ikehata et al.   DNA REPAIR

Synergistic modulation of cyclobutane pyrimidine dimer photoproduct formation and deamination at a TmCG site over a full helical DNA turn in a nucleosome core particle

(2014) Qian Song et al.   NUCLEIC ACIDS RESEARCH

Multiplex mapping of chromatin accessibility and DNA methylation within targeted single molecules identifies epigenetic heterogeneity in neural stem cells and glioblastoma

(2013) N. H. Nabilsi et al.   GENOME RESEARCH

Epigenetic diversity of Kaposi’s sarcoma–associated herpesvirus

(2013) Russell P. Darst et al.   NUCLEIC ACIDS RESEARCH

Preparation of Site-specific T=mCGcis-synCyclobutane Dimer-containing Template and Its Error-free Bypass by Yeast and Human Polymerase η

(2012) Qian Song et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Controls of Nucleosome Positioning in the Human Genome

(2012) Daniel J. Gaffney et al.   PLoS Genetics

Nucleosome Structure(s) and Stability: Variations on a Theme

(2011) Andrew J. Andrews et al.   Annual Review of Biophysics

WIF1 is a frequent target for epigenetic silencing in squamous cell carcinoma of the cervix

(2011) Amber L. Delmas et al.   CARCINOGENESIS

Modulation of the processive abasic site lyase activity of a pyrimidine dimer glycosylase

(2011) Olga P. Ryabinina et al.   DNA REPAIR

The Mechanisms of UV Mutagenesis

(2011) Hironobu IKEHATA et al.   JOURNAL OF RADIATION RESEARCH

MethylViewer: computational analysis and editing for bisulfite sequencing and methyltransferase accessibility protocol for individual templates (MAPit) projects

(2010) Carolina E. Pardo et al.   NUCLEIC ACIDS RESEARCH

Single-base resolution mapping of H1-nucleosome interactions and 3D organization of the nucleosome

(2010) S. H. Syed et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Acceleration of 5-Methylcytosine Deamination in Cyclobutane Dimers by G and Its Implications for UV-Induced C-to-T Mutation Hotspots

(2009) Vincent J. Cannistraro et al.   JOURNAL OF MOLECULAR BIOLOGY

Highly error-free role of DNA polymerase   in the replicative bypass of UV-induced pyrimidine dimers in mouse and human cells

(2009) J.-H. Yoon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential repair of UVB-induced cyclobutane pyrimidine dimers in cultured human skin cells and whole human skin

(2008) Stéphane Mouret et al.   DNA REPAIR

Single-molecule analysis of chromatin: Changing the view of genomes one molecule at a time

(2008) Santhi Pondugula et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

MAP Kinase-Mediated c-fos Regulation Relies on a Histone Acetylation Relay Switch

(2008) Amanda O'Donnell et al.   MOLECULAR CELL