Precise quantification of translation inhibition by mRNA structures that overlap with the ribosomal footprint in N-terminal coding sequences

Riboswitches: From living biosensors to novel targets of antibiotics

(2016) Elnaz Mehdizadeh Aghdam et al.   GENE

Physical Origins of Codon Positions That Strongly Influence Cotranslational Folding: A Framework for Controlling Nascent-Protein Folding

(2016) Ajeet K. Sharma et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Translation Initiation is Controlled by RNA Folding Kinetics via a Ribosome Drafting Mechanism

(2016) Amin Espah Borujeni et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Bioinformatics for the synthetic biology of natural products: integrating across the Design–Build–Test cycle

(2016) Pablo Carbonell et al.   NATURAL PRODUCT REPORTS

Opportunities in the design and application of RNA for gene expression control

(2016) Maureen McKeague et al.   NUCLEIC ACIDS RESEARCH

Modular cell design for rapid, efficient strain engineering toward industrialization of biology

(2016) Cong T Trinh et al.   Current Opinion in Chemical Engineering

Multiple ways to regulate translation initiation in bacteria: Mechanisms, regulatory circuits, dynamics

(2015) Mélodie Duval et al.   BIOCHIMIE

Combinatorial pathway engineering for optimized production of the anti-malarial FR900098

(2015) Todd S. Freestone et al.   BIOTECHNOLOGY AND BIOENGINEERING

Metabolic pathway balancing and its role in the production of biofuels and chemicals

(2015) J Andrew Jones et al.   CURRENT OPINION IN BIOTECHNOLOGY

A renaissance in RNA synthetic biology: new mechanisms, applications and tools for the future

(2015) James Chappell et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Rational design of a synthetic Entner–Doudoroff pathway for improved and controllable NADPH regeneration

(2015) Chiam Yu Ng et al.   METABOLIC ENGINEERING

Multiplexed tracking of combinatorial genomic mutations in engineered cell populations

(2015) Ramsey I Zeitoun et al.   NATURE BIOTECHNOLOGY

Trade-offs between tRNA abundance and mRNA secondary structure support smoothing of translation elongation rate

(2015) Thomas E. Gorochowski et al.   NUCLEIC ACIDS RESEARCH

A predictive biophysical model of translational coupling to coordinate and control protein expression in bacterial operons

(2015) Tian Tian et al.   NUCLEIC ACIDS RESEARCH

One step DNA assembly for combinatorial metabolic engineering

(2014) Pieter Coussement et al.   METABOLIC ENGINEERING

Efficient search, mapping, and optimization of multi-protein genetic systems in diverse bacteria

(2014) I. Farasat et al.   Molecular Systems Biology

Principles of genetic circuit design

(2014) Jennifer A N Brophy et al.   NATURE METHODS

Permanent genetic memory with >1-byte capacity

(2014) Lei Yang et al.   NATURE METHODS

Composability of regulatory sequences controlling transcription and translation inEscherichia coli

(2013) Sriram Kosuri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Causes and Effects of N-Terminal Codon Bias in Bacterial Genes

(2013) D. B. Goodman et al.   SCIENCE

Energetics of activation of GTP hydrolysis on the ribosome

(2013) Göran Wallin et al.   Nature Communications

The ribosome uses two active mechanisms to unwind messenger RNA during translation

(2011) Xiaohui Qu et al.   NATURE

The bacterial N-end rule pathway: expect the unexpected

(2010) D. A. Dougan et al.   MOLECULAR MICROBIOLOGY

Translation efficiency is determined by both codon bias and folding energy

(2010) Tamir Tuller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Automated design of synthetic ribosome binding sites to control protein expression

(2009) Howard M Salis et al.   NATURE BIOTECHNOLOGY

Coding-Sequence Determinants of Gene Expression in Escherichia coli

(2009) G. Kudla et al.   SCIENCE

A structural view of translation initiation in bacteria

(2008) A. Simonetti et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Electrostatics in the Ribosomal Tunnel Modulate Chain Elongation Rates

(2008) Jianli Lu et al.   JOURNAL OF MOLECULAR BIOLOGY

Small RNA Binding to 5′ mRNA Coding Region Inhibits Translational Initiation

(2008) Marie Bouvier et al.   MOLECULAR CELL

The Vienna RNA Websuite

(2008) A. R. Gruber et al.   NUCLEIC ACIDS RESEARCH