A Fast Method for the Segmentation of Synaptic Junctions and Mitochondria in Serial Electron Microscopic Images of the Brain

A high-throughput framework to detect synapses in electron microscopy images

(2013) S. Navlakha et al.   BIOINFORMATICS

Learning Context Cues for Synapse Segmentation

(2013) Carlos Becker et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Synapse classification and localization in Electron Micrographs

(2013) Vignesh Jagadeesh et al.   PATTERN RECOGNITION LETTERS

Method: automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets

(2012) Richard J Giuly et al.   BMC BIOINFORMATICS

Supervoxel-Based Segmentation of Mitochondria in EM Image Stacks With Learned Shape Features

(2011) A. Lucchi et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images

(2011) Anna Kreshuk et al.   PLoS One

Espina: A Tool for the Automated Segmentation and Counting of Synapses in Large Stacks of Electron Microscopy Images

(2011) Juan Morales et al.   Frontiers in Neuroanatomy

From the Connectome to the Synaptome: An Epic Love Story

(2010) J. DeFelipe   SCIENCE

Convolutional Networks Can Learn to Generate Affinity Graphs for Image Segmentation

(2009) Srinivas C. Turaga et al.   NEURAL COMPUTATION

Counting synapses using FIB/SEM microscopy: a true revolution for ultrastructural volume reconstruction

(2009) Angel Merchan-Pérez   Frontiers in Neuroanatomy

Serial Section Scanning Electron Microscopy of Adult Brain Tissue Using Focused Ion Beam Milling

(2008) G. Knott et al.   JOURNAL OF NEUROSCIENCE

Axon tracking in serial block-face scanning electron microscopy

(2008) Elizabeth Jurrus et al.   MEDICAL IMAGE ANALYSIS

Automatic joint classification and segmentation of whole cell 3D images

(2008) Rajesh Narasimha et al.   PATTERN RECOGNITION