标题
Comparison of computational methods for Hi-C data analysis
作者
关键词
-
出版物
NATURE METHODS
Volume 14, Issue 7, Pages 679-685
出版商
Springer Nature
发表日期
2017-06-12
DOI
10.1038/nmeth.4325
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- A critical assessment of topologically associating domain prediction tools
- (2017) Rola Dali et al. NUCLEIC ACIDS RESEARCH
- Genome-wide mapping and analysis of chromosome architecture
- (2016) Anthony D. Schmitt et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
- (2016) Neva C. Durand et al. Cell Systems
- Identification of hierarchical chromatin domains
- (2015) Caleb Weinreb et al. BIOINFORMATICS
- diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data
- (2015) Aaron T.L. Lun et al. BMC BIOINFORMATICS
- How computer science can help in understanding the 3D genome architecture
- (2015) Yoli Shavit et al. BRIEFINGS IN BIOINFORMATICS
- Modeling chromosomes: Beyond pretty pictures
- (2015) Maxim V. Imakaev et al. FEBS LETTERS
- The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
- (2015) Stefan Schoenfelder et al. GENOME RESEARCH
- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Condensin-driven remodelling of X chromosome topology during dosage compensation
- (2015) Emily Crane et al. NATURE
- Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
- (2015) Borbala Mifsud et al. NATURE GENETICS
- Three-dimensional genome architecture: players and mechanisms
- (2015) Ana Pombo et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Identification of alternative topological domains in chromatin
- (2014) Darya Filippova et al. Algorithms for Molecular Biology
- HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements
- (2014) Yih-Chii Hwang et al. BIOINFORMATICS
- Two-dimensional segmentation for analyzing Hi-C data
- (2014) C. Levy-Leduc et al. BIOINFORMATICS
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
- (2014) F. Ay et al. GENOME RESEARCH
- Comparative analysis of metazoan chromatin organization
- (2014) Joshua W. K. Ho et al. NATURE
- Functional implications of genome topology
- (2013) Giacomo Cavalli et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
- (2012) Tom Sexton et al. CELL
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- Iterative correction of Hi-C data reveals hallmarks of chromosome organization
- (2012) Maxim Imakaev et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
- (2011) Eitan Yaffe et al. NATURE GENETICS
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
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