标题
A critical assessment of topologically associating domain prediction tools
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume 45, Issue 6, Pages 2994-3005
出版商
Oxford University Press (OUP)
发表日期
2017-02-28
DOI
10.1093/nar/gkx145
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Chromatin Domains: The Unit of Chromosome Organization
- (2016) Jesse R. Dixon et al. MOLECULAR CELL
- De novo deciphering three-dimensional chromatin interaction and topological domains by wavelet transformation of epigenetic profiles
- (2016) Yong Chen et al. NUCLEIC ACIDS RESEARCH
- Activation of proto-oncogenes by disruption of chromosome neighborhoods
- (2016) D. Hnisz et al. SCIENCE
- Breaking TADs: How Alterations of Chromatin Domains Result in Disease
- (2016) Darío G. Lupiáñez et al. TRENDS IN GENETICS
- Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
- (2016) Neva C. Durand et al. Cell Systems
- HiCdat: a fast and easy-to-use Hi-C data analysis tool
- (2015) Marc W. Schmid et al. BMC BIOINFORMATICS
- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- (2015) Darío G. Lupiáñez et al. CELL
- Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression
- (2015) Maxwell W. Libbrecht et al. GENOME RESEARCH
- An Overview of Genome Organization and How We Got There: from FISH to Hi-C
- (2015) James Fraser et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation
- (2015) J. Fraser et al. Molecular Systems Biology
- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- Three-dimensional genome architecture: players and mechanisms
- (2015) Ana Pombo et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- TopDom: an efficient and deterministic method for identifying topological domains in genomes
- (2015) Hanjun Shin et al. NUCLEIC ACIDS RESEARCH
- Breaking TADs: insights into hierarchical genome organization
- (2015) Pedro P Rocha et al. Epigenomics
- Comparative Hi-C Reveals that CTCF Underlies Evolution of Chromosomal Domain Architecture
- (2015) Matteo Vietri Rudan et al. Cell Reports
- Contribution of Topological Domains and Loop Formation to 3D Chromatin Organization
- (2015) Vuthy Ea et al. Genes
- Two-dimensional segmentation for analyzing Hi-C data
- (2014) C. Levy-Leduc et al. BIOINFORMATICS
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- The 3D Genome in Transcriptional Regulation and Pluripotency
- (2014) David U. Gorkin et al. Cell Stem Cell
- Genome-wide analysis of local chromatin packing inArabidopsis thaliana
- (2014) Congmao Wang et al. GENOME RESEARCH
- Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
- (2014) F. Ay et al. GENOME RESEARCH
- Topologically associating domains are stable units of replication-timing regulation
- (2014) Benjamin D. Pope et al. NATURE
- Species-Level Deconvolution of Metagenome Assemblies with Hi-C–Based Contact Probability Maps
- (2014) Joshua N. Burton et al. G3-Genes Genomes Genetics
- Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
- (2013) Jennifer E. Phillips-Cremins et al. CELL
- Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
- (2013) Takashi Nagano et al. NATURE
- High-Resolution Mapping of the Spatial Organization of a Bacterial Chromosome
- (2013) T. B. K. Le et al. SCIENCE
- Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
- (2012) Tom Sexton et al. CELL
- A decade of 3C technologies: insights into nuclear organization
- (2012) E. de Wit et al. GENES & DEVELOPMENT
- Gene Density, Transcription, and Insulators Contribute to the Partition of the Drosophila Genome into Physical Domains
- (2012) Chunhui Hou et al. MOLECULAR CELL
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- A three-dimensional model of the yeast genome
- (2010) Zhijun Duan et al. NATURE
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
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