Reproducibility of computational workflows is automated using continuous analysis

Semi-supervised learning of the electronic health record for phenotype stratification

(2016) Brett K. Beaulieu-Jones et al.   JOURNAL OF BIOMEDICAL INFORMATICS

1,500 scientists lift the lid on reproducibility

(2016) Monya Baker   NATURE

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

Enhancing reproducibility for computational methods

(2016) V. Stodden et al.   SCIENCE

Scalable and cost-effective NGS genotyping in the cloud

(2015) Yassine Souilmi et al.   BMC Medical Genomics

Organoid Models of Human and Mouse Ductal Pancreatic Cancer

(2015) Sylvia F. Boj et al.   CELL

Rebooting review

(2015)   NATURE BIOTECHNOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Software with impact

(2014)   NATURE METHODS

Long-Term Reduction of T-Cell Intracellular Antigens Reveals a Transcriptome Associated with Extracellular Matrix and Cell Adhesion Components

(2014) Mario Núñez et al.   PLoS One

Reproducibility

(2014) M. McNutt   SCIENCE

Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome

(2013) Daniel Garijo et al.   PLoS One

Open science and reproducible research

(2012) T. Groves et al.   BMJ-British Medical Journal

Case studies in reproducibility

(2011) T. Hothorn et al.   BRIEFINGS IN BIOINFORMATICS

Reproducible Research in Computational Science

(2011) R. D. Peng   SCIENCE

The Mycobacterium tuberculosis Drugome and Its Polypharmacological Implications

(2010) Sarah L. Kinnings et al.   PLoS Computational Biology

Repeatability of published microarray gene expression analyses

(2009) John P A Ioannidis et al.   NATURE GENETICS