Whole-brain serial-section electron microscopy in larval zebrafish

The Fuzzy Logic of Network Connectivity in Mouse Visual Thalamus

(2016) Josh Lyskowski Morgan et al.   CELL

Anatomy and function of an excitatory network in the visual cortex

(2016) Wei-Chung Allen Lee et al.   NATURE

Dense EM-based reconstruction of the interglomerular projectome in the zebrafish olfactory bulb

(2016) Adrian A Wanner et al.   NATURE NEUROSCIENCE

Neural Circuits Underlying Visually Evoked Escapes in Larval Zebrafish

(2016) Timothy W. Dunn et al.   NEURON

Quantitative neuroanatomy for connectomics in Drosophila

(2016) Casey M Schneider-Mizell et al.   eLife

Saturated Reconstruction of a Volume of Neocortex

(2015) Narayanan Kasthuri et al.   CELL

Large-scale imaging in small brains

(2015) Misha B Ahrens et al.   CURRENT OPINION IN NEUROBIOLOGY

High-resolution, high-throughput imaging with a multibeam scanning electron microscope

(2015) A.L. EBERLE et al.   JOURNAL OF MICROSCOPY

A multilevel multimodal circuit enhances action selection in Drosophila

(2015) Tomoko Ohyama et al.   NATURE

High-resolution whole-brain staining for electron microscopic circuit reconstruction

(2015) Shawn Mikula et al.   NATURE METHODS

Whole-brain activity mapping onto a zebrafish brain atlas

(2015) Owen Randlett et al.   NATURE METHODS

A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies

(2015) Gregory D. Marquart et al.   Frontiers in Neural Circuits

Vivaldi: A Domain-Specific Language for Volume Processing and Visualization on Distributed Heterogeneous Systems

(2014) Hyungsuk Choi et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

Whole-Brain Activity Maps Reveal Stereotyped, Distributed Networks for Visuomotor Behavior

(2014) Ruben Portugues et al.   NEURON

Imaging ATUM ultrathin section libraries with WaferMapper: a multi-scale approach to EM reconstruction of neural circuits

(2014) Kenneth J. Hayworth et al.   Frontiers in Neural Circuits

Neuronal connectome of a sensory-motor circuit for visual navigation

(2014) Nadine Randel et al.   eLife

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

(2013) Misha B Ahrens et al.   NATURE METHODS

Optimization of a GCaMP Calcium Indicator for Neural Activity Imaging

(2012) J. Akerboom et al.   JOURNAL OF NEUROSCIENCE

A method for detecting molecular transport within the cerebral ventricles of live zebrafish (Danio rerio) larvae

(2012) Maxwell H. Turner et al.   JOURNAL OF PHYSIOLOGY-LONDON

Elastic volume reconstruction from series of ultra-thin microscopy sections

(2012) Stephan Saalfeld et al.   NATURE METHODS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

The Connectome of a Decision-Making Neural Network

(2012) T. A. Jarrell et al.   SCIENCE

Volume electron microscopy for neuronal circuit reconstruction

(2011) Kevin L Briggman et al.   CURRENT OPINION IN NEUROBIOLOGY

Network anatomy and in vivo physiology of visual cortical neurons

(2011) Davi D. Bock et al.   NATURE

Wiring specificity in the direction-selectivity circuit of the retina

(2011) Kevin L. Briggman et al.   NATURE

The Big and the Small: Challenges of Imaging the Brain's Circuits

(2011) J. W. Lichtman et al.   SCIENCE

As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets

(2010) S. Saalfeld et al.   BIOINFORMATICS

Circuit Neuroscience in Zebrafish

(2010) Rainer W. Friedrich et al.   CURRENT BIOLOGY

The Synaptic Organization of the Claustral Projection to the Cat's Visual Cortex

(2010) N. M. da Costa et al.   JOURNAL OF NEUROSCIENCE

Ultrastructural Analysis of Hippocampal Neuropil from the Connectomics Perspective

(2010) Yuriy Mishchenko et al.   NEURON

CATMAID: collaborative annotation toolkit for massive amounts of image data

(2009) S. Saalfeld et al.   BIOINFORMATICS

Mosaic hoxb4a Neuronal Pleiotropism in Zebrafish Caudal Hindbrain

(2009) Leung-Hang Ma et al.   PLoS One

Zebrafish and motor control over the last decade

(2007) Joseph R. Fetcho et al.   BRAIN RESEARCH REVIEWS