A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies

GeIST: a pipeline for mapping integrated DNA elements: Fig. 1.

(2015) Matthew C. LaFave et al.   BIOINFORMATICS

High-resolution analysis of central nervous system expression patterns in zebrafish Gal4 enhancer-trap lines

(2015) Hideo Otsuna et al.   DEVELOPMENTAL DYNAMICS

Whole-brain activity mapping onto a zebrafish brain atlas

(2015) Owen Randlett et al.   NATURE METHODS

Increased functional protein expression using nucleotide sequence features enriched in highly expressed genes in zebrafish

(2015) Eric J. Horstick et al.   NUCLEIC ACIDS RESEARCH

Isolation of Novel CreERT2-Driver Lines in Zebrafish Using an Unbiased Gene Trap Approach

(2015) Peggy Jungke et al.   PLoS One

Evolution and genomic organization of muscle microRNAs in fish genomes

(2014) Pedro Gabriel Nachtigall et al.   BMC EVOLUTIONARY BIOLOGY

Direct activation of the Mauthner cell by electric field pulses drives ultrarapid escape responses

(2014) Kathryn M. Tabor et al.   JOURNAL OF NEUROPHYSIOLOGY

Gsx1 expression defines neurons required for prepulse inhibition

(2014) S A Bergeron et al.   MOLECULAR PSYCHIATRY

Poly(A)-tail profiling reveals an embryonic switch in translational control

(2014) Alexander O. Subtelny et al.   NATURE

Whole-Brain Activity Maps Reveal Stereotyped, Distributed Networks for Visuomotor Behavior

(2014) Ruben Portugues et al.   NEURON

Four GABAergic Interneurons Impose Feeding Restraint in Drosophila

(2014) Allan-Hermann Pool et al.   NEURON

Efficient generation of knock-in transgenic zebrafish carrying reporter/driver genes by CRISPR/Cas9-mediated genome engineering

(2014) Yukiko Kimura et al.   Scientific Reports

Hindbrain V2a Neurons in the Excitation of Spinal Locomotor Circuits during Zebrafish Swimming

(2013) Yukiko Kimura et al.   CURRENT BIOLOGY

Transgenic tools to characterize neuronal properties of discrete populations of zebrafish neurons

(2013) C. Satou et al.   DEVELOPMENT

A large-scale zebrafish gene knockout resource for the genome-wide study of gene function

(2013) G. K. Varshney et al.   GENOME RESEARCH

Cholinergic left-right asymmetry in the habenulo-interpeduncular pathway

(2013) E. Hong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Silencer-delimited transgenesis: NRSE/RE1 sequences promote neural-specific transgene expression in a NRSF/REST-dependent manner

(2012) Xiayang Xie et al.   BMC BIOLOGY

Extensive alternative polyadenylation during zebrafish development

(2012) I. Ulitsky et al.   GENOME RESEARCH

The Dorsal Raphe Modulates Sensory Responsiveness during Arousal in Zebrafish

(2012) T. Yokogawa et al.   JOURNAL OF NEUROSCIENCE

Generation of Multiple Classes of V0 Neurons in Zebrafish Spinal Cord: Progenitor Heterogeneity and Temporal Control of Neuronal Diversity

(2012) C. Satou et al.   JOURNAL OF NEUROSCIENCE

ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains

(2012) Olaf Ronneberger et al.   NATURE METHODS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

SLiCE: a novel bacterial cell extract-based DNA cloning method

(2012) Yongwei Zhang et al.   NUCLEIC ACIDS RESEARCH

Translational inhibition by deadenylation-independent mechanisms is central to microRNA-mediated silencing in zebrafish

(2012) Y. Mishima et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Brain selective transgene expression in zebrafish using an NRSE derived motif

(2012) Sadie A. Bergeron et al.   Frontiers in Neural Circuits

A GAL4-Driver Line Resource for Drosophila Neurobiology

(2012) Arnim Jenett et al.   Cell Reports

Transgenic zebrafish expressing green fluorescent protein in dopaminergic neurons of the ventral diencephalon

(2011) Yanwei Xi et al.   DEVELOPMENTAL DYNAMICS

ΦC31 Integrase Mediates Efficient Cassette Exchange in the Zebrafish Germline

(2011) Gui Hu et al.   DEVELOPMENTAL DYNAMICS

BrainAligner: 3D registration atlases of Drosophila brains

(2011) Hanchuan Peng et al.   NATURE METHODS

A versatile in vivo system for directed dissection of gene expression patterns

(2011) Daryl M Gohl et al.   NATURE METHODS

Delaying Gal4-Driven Gene Expression in the Zebrafish with Morpholinos and Gal80

(2011) Adèle Faucherre et al.   PLoS One

A structural and functional ground plan for neurons in the hindbrain of zebrafish

(2011) A. Kinkhabwala et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive catecholaminergic projectome analysis reveals single-neuron integration of zebrafish ascending and descending dopaminergic systems

(2011) Tuan Leng Tay et al.   Nature Communications

Refinement of Tools for Targeted Gene Expression in Drosophila

(2010) B. D. Pfeiffer et al.   GENETICS

Identification of the Zebrafish Ventral Habenula As a Homolog of the Mammalian Lateral Habenula

(2010) R. Amo et al.   JOURNAL OF NEUROSCIENCE

Globally optimal stitching of tiled 3D microscopic image acquisitions

(2009) S. Preibisch et al.   BIOINFORMATICS

Transposon-mediated BAC transgenesis in zebrafish and mice

(2009) Maximiliano L Suster et al.   BMC GENOMICS

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Anatomy of zebrafish cerebellum and screen for mutations affecting its development

(2009) Young-Ki Bae et al.   DEVELOPMENTAL BIOLOGY

Unidirectional startle responses and disrupted left-right co-ordination of motor behaviors inrobo3mutant zebrafish

(2009) H. A. Burgess et al.   GENES BRAIN AND BEHAVIOR

The cellular architecture of the larval zebrafish tectum, as revealed by Gal4 enhancer trap lines

(2009) Ethan K. Scott   Frontiers in Neural Circuits

Pathfinding in a large vertebrate axon tract: isotypic interactions guide retinotectal axons at multiple choice points

(2008) A. J. Pittman et al.   DEVELOPMENT

V2a and V2b neurons are generated by the final divisions of pair-producing progenitors in the zebrafish spinal cord

(2008) Y. Kimura et al.   DEVELOPMENT

Germline transgenesis of zebrafish using the medakaTol1transposon system

(2008) Akihiko Koga et al.   DEVELOPMENTAL DYNAMICS

Axonal projections originating from raphe serotonergic neurons in the developing and adult zebrafish,Danio rerio, using transgenics to visualize raphe-specificpet1expression

(2008) Christina Lillesaar et al.   JOURNAL OF COMPARATIVE NEUROLOGY

The impact of microRNAs on protein output

(2008) Daehyun Baek et al.   NATURE

Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish

(2008) K. Asakawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tools for neuroanatomy and neurogenetics in Drosophila

(2008) B. D. Pfeiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA