Pedigree reconstruction from SNP data: parentage assignment, sibship clustering and beyond

Inbreeding depression across the lifespan in a wild mammal population

(2016) Jisca Huisman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bayesian pedigree inference with small numbers of single nucleotide polymorphisms via a factor-graph representation

(2016) Eric C. Anderson et al.   THEORETICAL POPULATION BIOLOGY

Valid estimates of individual inbreeding coefficients from marker-based pedigrees are not feasible in wild populations with low allelic diversity

(2015) Helen R. Taylor et al.   CONSERVATION GENETICS

How many markers are enough? Factors influencing parentage testing in different livestock populations

(2015) E.M. Strucken et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Replicated analysis of the genetic architecture of quantitative traits in two wild great tit populations

(2015) Anna W. Santure et al.   MOLECULAR ECOLOGY

Estimating quantitative genetic parameters in wild populations: a comparison of pedigree and genomic approaches

(2014) Camillo Bérénos et al.   MOLECULAR ECOLOGY

An improvement on the maximum likelihood reconstruction of pedigrees from marker data

(2013) J Wang   HEREDITY

Confirmation and discovery of maternal grandsires and great-grandsires in dairy cattle

(2013) P.M. VanRaden et al.   JOURNAL OF DAIRY SCIENCE

Identification of Pedigree Relationship from Genome Sharing

(2013) William G. Hill et al.   G3-Genes Genomes Genetics

Computationally Efficient Sibship and Parentage Assignment from Multilocus Marker Data

(2012) J. Wang   GENETICS

Re-mating across years and intralineage polygyny are associated with greater than expected levels of inbreeding in wild red deer

(2012) K. V. Stopher et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Large-scale Parentage Inference with SNPs: an Efficient Algorithm for Statistical Confidence of Parent Pair Allocations

(2012) Eric C. Anderson   Statistical Applications in Genetics and Molecular Biology

A Common Dataset for Genomic Analysis of Livestock Populations

(2012) Matthew A. Cleveland et al.   G3-Genes Genomes Genetics

Technical note: Efficient parentage assignment and pedigree reconstruction with dense single nucleotide polymorphism data

(2011) B.J. Hayes   JOURNAL OF DAIRY SCIENCE

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Comparing parentage inference software: reanalysis of a red deer pedigree

(2010) CRAIG A. WALLING et al.   MOLECULAR ECOLOGY

FRANz: reconstruction of wild multi-generation pedigrees

(2009) M. Riester et al.   BIOINFORMATICS

A practical guide to methods of parentage analysis

(2009) ADAM G. JONES et al.   Molecular Ecology Resources

COLONY: a program for parentage and sibship inference from multilocus genotype data

(2009) OWEN R. JONES et al.   Molecular Ecology Resources

Parentage identification using single nucleotide polymorphism genotypes: Application to product tracing1

(2008) W. G. Hill et al.   JOURNAL OF ANIMAL SCIENCE