A from-benchtop-to-desktop workflow for validating HTS data and for taxonomic identification in diet metabarcoding studies
出版年份 2017 全文链接
标题
A from-benchtop-to-desktop workflow for validating HTS data and for taxonomic identification in diet metabarcoding studies
作者
关键词
-
出版物
Molecular Ecology Resources
Volume 17, Issue 6, Pages e146-e159
出版商
Wiley
发表日期
2017-08-04
DOI
10.1111/1755-0998.12703
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Random sampling causes the low reproducibility of rare eukaryotic OTUs in Illumina COI metabarcoding
- (2017) Matthieu Leray et al. PeerJ
- DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments
- (2017) Anders Lanzén et al. PLoS One
- Unbiased probabilistic taxonomic classification for DNA barcoding
- (2016) Panu Somervuo et al. BIOINFORMATICS
- Improving morphological diet studies with molecular ecology: An application for invasive mammal predation on island birds
- (2016) Diane Zarzoso-Lacoste et al. BIOLOGICAL CONSERVATION
- Merging DNA metabarcoding and ecological network analysis to understand and build resilient terrestrial ecosystems
- (2016) Darren M. Evans et al. FUNCTIONAL ECOLOGY
- The use of DNA barcodes in food web construction—terrestrial and aquatic ecologists unite!
- (2016) Tomas Roslin et al. GENOME
- The effects of parameter choice on defining molecular operational taxonomic units and resulting ecological analyses of metabarcoding data
- (2016) Elizabeth L. Clare et al. GENOME
- What you need is what you eat? Prey selection by the bat Myotis daubentonii
- (2016) Eero J. Vesterinen et al. MOLECULAR ECOLOGY
- High-throughput metabarcoding of eukaryotic diversity for environmental monitoring of offshore oil-drilling activities
- (2016) Anders Lanzén et al. MOLECULAR ECOLOGY
- Evaluating and optimizing the performance of software commonly used for the taxonomic classification of DNA metabarcoding sequence data
- (2016) Rodney T. Richardson et al. Molecular Ecology Resources
- How to limit false positives in environmental DNA and metabarcoding?
- (2016) Gentile Francesco Ficetola et al. Molecular Ecology Resources
- Indexed PCR Primers Induce Template-Specific Bias in Large-Scale DNA Sequencing Studies
- (2016) James L. O’Donnell et al. PLoS One
- Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects
- (2016) Vasco Elbrecht et al. PeerJ
- Being cosmopolitan: evolutionary history and phylogeography of a specialized raptor, the Osprey Pandion haliaetus
- (2015) Flavio Monti et al. BMC EVOLUTIONARY BIOLOGY
- DNA metabarcoding of insects and allies: an evaluation of primers and pipelines
- (2015) G.-J. Brandon-Mong et al. BULLETIN OF ENTOMOLOGICAL RESEARCH
- Different levels of precision in studies on the alimentary tract content of omnivorous fish affect predictions of their food niche and competitive interactions
- (2015) Małgorzata Adamczuk et al. COMPTES RENDUS BIOLOGIES
- The Quantification of Representative Sequences pipeline for amplicon sequencing: case study on within-population ITS1 sequence variation in a microparasite infectingDaphnia
- (2015) E. González-Tortuero et al. Molecular Ecology Resources
- Statistical approaches to account for false-positive errors in environmental DNA samples
- (2015) José J. Lahoz-Monfort et al. Molecular Ecology Resources
- Quantitative DNA metabarcoding: improved estimates of species proportional biomass using correction factors derived from control material
- (2015) Austen C. Thomas et al. Molecular Ecology Resources
- obitools: aunix-inspired software package for DNA metabarcoding
- (2015) Frédéric Boyer et al. Molecular Ecology Resources
- Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies
- (2015) Ida Baerholm Schnell et al. Molecular Ecology Resources
- Accurate multiplexing and filtering for high-throughput amplicon-sequencing
- (2015) Philippe Esling et al. NUCLEIC ACIDS RESEARCH
- DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity
- (2015) Matthieu Leray et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Discovering hidden biodiversity: the use of complementary monitoring of fish diet based on DNA barcoding in freshwater ecosystems
- (2015) Hyunbin Jo et al. Ecology and Evolution
- Divergence thresholds and divergent biodiversity estimates: can metabarcoding reliably describe zooplankton communities?
- (2015) Emily A. Brown et al. Ecology and Evolution
- Toward accurate molecular identification of species in complex environmental samples: testing the performance of sequence filtering and clustering methods
- (2015) Jullien M. Flynn et al. Ecology and Evolution
- A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes
- (2015) Craig W. Herbold et al. Frontiers in Microbiology
- Swarm v2: highly-scalable and high-resolution amplicon clustering
- (2015) Frédéric Mahé et al. PeerJ
- Highly Overlapping Winter Diet in Two Sympatric Lemming Species Revealed by DNA Metabarcoding
- (2015) Eeva M. Soininen et al. PLoS One
- From Benchtop to Desktop: Important Considerations when Designing Amplicon Sequencing Workflows
- (2015) Dáithí C. Murray et al. PLoS One
- Bioinformatic Amplicon Read Processing Strategies Strongly Affect Eukaryotic Diversity and the Taxonomic Composition of Communities
- (2015) Markus Majaneva et al. PLoS One
- Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol
- (2015) Vasco Elbrecht et al. PLoS One
- Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform
- (2015) Shadi Shokralla et al. Scientific Reports
- DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match
- (2014) B. E. Deagle et al. Biology Letters
- Environmental metabarcodes for insects:in silicoPCR reveals potential for taxonomic bias
- (2014) Laurence J. Clarke et al. Molecular Ecology Resources
- Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics
- (2014) J. Gibson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Reproducibility of pyrosequencing data for biodiversity assessment in complex communities
- (2014) Aibin Zhan et al. Methods in Ecology and Evolution
- PEAR: a fast and accurate Illumina Paired-End reAd mergeR
- (2013) J. Zhang et al. BIOINFORMATICS
- A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents
- (2013) Matthieu Leray et al. Frontiers in Zoology
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- The diet ofMyotis lucifugusacross Canada: assessing foraging quality and diet variability
- (2013) Elizabeth L. Clare et al. MOLECULAR ECOLOGY
- DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet
- (2013) M. De Barba et al. Molecular Ecology Resources
- Towards next-generation biodiversity assessment using DNA metabarcoding
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- Improving PCR detection of prey in molecular diet studies: importance of group-specific primer set selection and extraction protocol performances
- (2012) Diane Zarzoso-Lacoste et al. Molecular Ecology Resources
- Prey Preference of Snow Leopard (Panthera uncia) in South Gobi, Mongolia
- (2012) Wasim Shehzad et al. PLoS One
- Integrative analysis of environmental sequences using MEGAN4
- (2011) D. H. Huson et al. GENOME RESEARCH
- Who is eating what: diet assessment using next generation sequencing
- (2011) FRANCOIS POMPANON et al. MOLECULAR ECOLOGY
- Optimizing methods for PCR-based analysis of predation
- (2011) DANIELA SINT et al. Molecular Ecology Resources
- Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos
- (2011) Mehrdad Hajibabaei et al. PLoS One
- High-throughput sequencing offers insight into mechanisms of resource partitioning in cryptic bat species
- (2011) Orly Razgour et al. Ecology and Evolution
- An In silico approach for the evaluation of DNA barcodes
- (2010) Gentile Ficetola et al. BMC GENOMICS
- Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces
- (2010) MATT R. K. ZEALE et al. Molecular Ecology Resources
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- A PCR-based method for diet analysis in freshwater organisms using 18S rDNA barcoding on faeces
- (2009) EMMANUEL CORSE et al. Molecular Ecology Resources
- A universal DNA mini-barcode for biodiversity analysis
- (2008) Isabelle Meusnier et al. BMC GENOMICS
- Statistical Assignment of DNA Sequences Using Bayesian Phylogenetics
- (2008) Kasper Munch et al. SYSTEMATIC BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More