Inferring past demographic changes from contemporary genetic data: A simulation-based evaluation of the ABC methods implemented in diyabc

Demographic inferences using short-read genomic data in an approximate Bayesian computation framework: in silico evaluation of power, biases and proof of concept in Atlantic walrus

(2015) Aaron B. A. Shafer et al.   MOLECULAR ECOLOGY

Evidence for cryptic northern refugia in the last glacial period in Cryptomeria japonica

(2014) Megumi K. Kimura et al.   ANNALS OF BOTANY

DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data

(2014) Jean-Marie Cornuet et al.   BIOINFORMATICS

Detecting past changes of effective population size

(2014) Natacha Nikolic et al.   Evolutionary Applications

Detecting Concerted Demographic Response across Community Assemblages Using Hierarchical Approximate Bayesian Computation

(2014) Yvonne L. Chan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Model choice for phylogeographic inference using a large set of models

(2014) Tara A. Pelletier et al.   MOLECULAR ECOLOGY

ABC inference of multi-population divergence with admixture from unphased population genomic data

(2014) John D. Robinson et al.   MOLECULAR ECOLOGY

Ecological opportunities and specializations shaped genetic divergence in a highly mobile marine top predator

(2014) M. Louis et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

History of the invasive African olive tree in Australia and Hawaii: evidence for sequential bottlenecks and hybridization with the Mediterranean olive

(2013) Guillaume Besnard et al.   Evolutionary Applications

Phylogeographic and population genetic analyses reveal Pleistocene isolation followed by high gene flow in a wide ranging, but endangered, freshwater mussel

(2013) K Inoue et al.   HEREDITY

More precisely biased: increasing the number of markers is not a silver bullet in genetic bottleneck testing

(2013) M. Zachariah Peery et al.   MOLECULAR ECOLOGY

The number of markers and samples needed for detecting bottlenecks under realistic scenarios, with and without recovery: a simulation-based study

(2013) Sean M. Hoban et al.   MOLECULAR ECOLOGY

Extinction and recolonization of maritime Antarctica in the limpetNacella concinna(Strebel, 1908) during the last glacial cycle: toward a model of Quaternary biogeography in shallow Antarctic invertebrates

(2013) C. A. González-Wevar et al.   MOLECULAR ECOLOGY

Hierarchical Approximate Bayesian Computation

(2013) Brandon M. Turner et al.   PSYCHOMETRIKA

Two simple examples for understanding posterior p-values whose distributions are far from uniform

(2013) Andrew Gelman   Electronic Journal of Statistics

EasyABC: performing efficient approximate Bayesian computation sampling schemes using R

(2013) Franck Jabot et al.   Methods in Ecology and Evolution

Approximate Bayesian Computation

(2013) Mikael Sunnåker et al.   PLoS Computational Biology

Demographic Divergence History of Pied Flycatcher and Collared Flycatcher Inferred from Whole-Genome Re-sequencing Data

(2013) Krystyna Nadachowska-Brzyska et al.   PLoS Genetics

Genomic Evidence for Island Population Conversion Resolves Conflicting Theories of Polar Bear Evolution

(2013) James A. Cahill et al.   PLoS Genetics

Generation length for mammals

(2013) Moreno Di Marco et al.   Nature Conservation-Bulgaria

A Novel Approach for Choosing Summary Statistics in Approximate Bayesian Computation

(2012) S. Aeschbacher et al.   GENETICS

History of expansion and anthropogenic collapse in a top marine predator of the Black Sea estimated from genetic data

(2012) M. C. Fontaine et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

abc: an R package for approximate Bayesian computation (ABC)

(2012) Katalin Csilléry et al.   Methods in Ecology and Evolution

Molecular insights into the historic demography of bowhead whales: understanding the evolutionary basis of contemporary management practices

(2012) C. D. Phillips et al.   Ecology and Evolution

New Insight into the History of Domesticated Apple: Secondary Contribution of the European Wild Apple to the Genome of Cultivated Varieties

(2012) Amandine Cornille et al.   PLoS Genetics

Inferring Population Decline and Expansion From Microsatellite Data: A Simulation-Based Evaluation of the Msvar Method

(2011) Christophe Girod et al.   GENETICS

Approximate Bayesian computation reveals the factors that influence genetic diversity and population structure of foxsnakes

(2011) J. R. ROW et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Inferring the origin of populations introduced from a genetically structured native range by approximate Bayesian computation: case study of the invasive ladybird Harmonia axyridis

(2011) E. LOMBAERT et al.   MOLECULAR ECOLOGY

Bayesian inference of a historical bottleneck in a heavily exploited marine mammal

(2011) J. I. HOFFMAN et al.   MOLECULAR ECOLOGY

Multiple lines of evidence for demographic and range expansion of a temperate species (Hyla sarda) during the last glaciation

(2011) ROBERTA BISCONTI et al.   MOLECULAR ECOLOGY

Species-specific responses of Late Quaternary megafauna to climate and humans

(2011) Eline D. Lorenzen et al.   NATURE

Lack of confidence in approximate Bayesian computation model choice

(2011) C. P. Robert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ABC-SysBio--approximate Bayesian computation in Python with GPU support

(2010) J. Liepe et al.   BIOINFORMATICS

Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0)

(2010) Jean-Marie Cornuet et al.   BMC BIOINFORMATICS

ABCtoolbox: a versatile toolkit for approximate Bayesian computations

(2010) Daniel Wegmann et al.   BMC BIOINFORMATICS

ABC as a flexible framework to estimate demography over space and time: some cons, many pros

(2010) G. BERTORELLE et al.   MOLECULAR ECOLOGY

Lineage divergence and speciation in the Web-toed Salamanders (Plethodontidae: Hydromantes) of the Sierra Nevada, California

(2010) SEAN M. ROVITO   MOLECULAR ECOLOGY

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

PopABC: a program to infer historical demographic parameters

(2009) Joao S. Lopes et al.   BIOINFORMATICS

Ecological Change, Range Fluctuations and Population Dynamics during the Pleistocene

(2009) Michael Hofreiter et al.   CURRENT BIOLOGY

The Last Glacial Maximum

(2009) P. U. Clark et al.   SCIENCE

Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation

(2008) Jean-Marie Cornuet et al.   BIOINFORMATICS

Mutation patterns of mtDNA: Empirical inferences for the coding region

(2008) Cristina Santos et al.   BMC EVOLUTIONARY BIOLOGY

The complete mitochondrial genome of the Antarctic springtail Cryptopygus antarcticus (Hexapoda: Collembola)

(2008) Antonio Carapelli et al.   BMC GENOMICS

Demographic processes shaping genetic variation

(2008) Amy Lawton-Rauh   CURRENT OPINION IN PLANT BIOLOGY

CLIMATE CHANGE AND THE MOLECULAR ECOLOGY OF ARCTIC MARINE MAMMALS

(2008) Gregory O'Corry-Crowe   ECOLOGICAL APPLICATIONS

COMPUTER PROGRAMS: onesamp: a program to estimate effective population size using approximate Bayesian computation

(2007) DAVID A. TALLMON et al.   Molecular Ecology Resources