ABC inference of multi-population divergence with admixture from unphased population genomic data

Diagnostic tools for approximate Bayesian computation using the coverage property

(2014) D. Prangle et al.   AUSTRALIAN & NEW ZEALAND JOURNAL OF STATISTICS

Gene-Flow in a Mosaic Hybrid Zone: Is Local Introgression Adaptive?

(2014) C. Fraisse et al.   GENETICS

Neandertal Admixture in Eurasia Confirmed by Maximum-Likelihood Analysis of Three Genomes

(2014) Konrad Lohse et al.   GENETICS

MTML-msBayes: Approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity

(2013) Wen Huang et al.   BMC BIOINFORMATICS

Simulating gene trees under the multispecies coalescent and time-dependent migration

(2013) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

INTEGRATIVE TESTING OF HOW ENVIRONMENTS FROM THE PAST TO THE PRESENT SHAPE GENETIC STRUCTURE ACROSS LANDSCAPES

(2013) Qixin He et al.   EVOLUTION

Identifying Loci Under Selection Against Gene Flow in Isolation-with-Migration Models

(2013) Vitor C. Sousa et al.   GENETICS

Comparative Species Divergence across Eight Triplets of Spiny Lizards (Sceloporus) Using Genomic Sequence Data

(2013) Adam D. Leaché et al.   Genome Biology and Evolution

Crossing the Species Barrier: Genomic Hotspots of Introgression between Two Highly Divergent Ciona intestinalis Species

(2013) Camille Roux et al.   MOLECULAR BIOLOGY AND EVOLUTION

Approximate Bayesian estimation of extinction rate in the FinnishDaphnia magnametapopulation

(2013) John D. Robinson et al.   MOLECULAR ECOLOGY

Likelihood-based inference of population history from low-coveragede novogenome assemblies

(2013) Jack Hearn et al.   MOLECULAR ECOLOGY

Great ape genetic diversity and population history

(2013) Javier Prado-Martinez et al.   NATURE

Understanding the origin of species with genome-scale data: modelling gene flow

(2013) Vitor Sousa et al.   NATURE REVIEWS GENETICS

A Comparative Review of Dimension Reduction Methods in Approximate Bayesian Computation

(2013) M. G. B. Blum et al.   STATISTICAL SCIENCE

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

(2013) Deren A. R. Eaton et al.   SYSTEMATIC BIOLOGY

Approximate Bayesian Computation

(2013) Mikael Sunnåker et al.   PLoS Computational Biology

Demographic Divergence History of Pied Flycatcher and Collared Flycatcher Inferred from Whole-Genome Re-sequencing Data

(2013) Krystyna Nadachowska-Brzyska et al.   PLoS Genetics

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Estimating demographic parameters from large-scale population genomic data using Approximate Bayesian Computation

(2012) Sen Li et al.   BMC GENETICS

A Novel Approach for Choosing Summary Statistics in Approximate Bayesian Computation

(2012) S. Aeschbacher et al.   GENETICS

Demographic Inference Using Spectral Methods on SNP Data, with an Analysis of the Human Out-of-Africa Expansion

(2012) S. Lukic et al.   GENETICS

Understanding the recent colonization history of a plant pathogenic fungus using population genetic tools and Approximate Bayesian Computation

(2012) B Barrès et al.   HEREDITY

Inferring the History of Population Size Change from Genome-Wide SNP Data

(2012) Christoph Theunert et al.   MOLECULAR BIOLOGY AND EVOLUTION

A likelihood-based comparison of population histories in a parasitoid guild

(2012) Konrad Lohse et al.   MOLECULAR ECOLOGY

Testing hypotheses for genealogical discordance in a rainforest lizard

(2012) Sonal Singhal et al.   MOLECULAR ECOLOGY

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

abc: an R package for approximate Bayesian computation (ABC)

(2012) Katalin Csilléry et al.   Methods in Ecology and Evolution

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

A General Method for Calculating Likelihoods Under the Coalescent Process

(2011) K. Lohse et al.   GENETICS

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

Interpreting the estimated timing of migration events between hybridizing species

(2011) JARED L. STRASBURG et al.   MOLECULAR ECOLOGY

On the nonidentifiability of migration time estimates in isolation with migration models

(2011) VITOR C. SOUSA et al.   MOLECULAR ECOLOGY

Bayesian inference of ancient human demography from individual genome sequences

(2011) Ilan Gronau et al.   NATURE GENETICS

Does Speciation between Arabidopsis halleri and Arabidopsis lyrata Coincide with Major Changes in a Molecular Target of Adaptation?

(2011) Camille Roux et al.   PLoS One

Lack of confidence in approximate Bayesian computation model choice

(2011) C. P. Robert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Approximate Bayesian computational methods

(2011) Jean-Michel Marin et al.   STATISTICS AND COMPUTING

Non-equilibrium allele frequency spectra via spectral methods

(2011) Sergio Lukić et al.   THEORETICAL POPULATION BIOLOGY

Demographic History of Oceania Inferred from Genome-wide Data

(2010) Andreas Wollstein et al.   CURRENT BIOLOGY

Likelihood-Free Inference of Population Structure and Local Adaptation in a Bayesian Hierarchical Model

(2010) E. Bazin et al.   GENETICS

A Likelihood Ratio Test of Speciation with Gene Flow Using Genomic Sequence Data

(2010) Ziheng Yang   Genome Biology and Evolution

Population genetic inference from genomic sequence variation

(2010) J. E. Pool et al.   GENOME RESEARCH

Colonization and/or mitochondrial selective sweeps across the North Atlantic intertidal assemblage revealed by multi-taxa approximate Bayesian computation

(2010) KATRIINA L. ILVES et al.   MOLECULAR ECOLOGY

msABC: a modification of Hudson’s ms to facilitate multi-locus ABC analysis

(2010) P. PAVLIDIS et al.   Molecular Ecology Resources

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

EXTREME HOST PLANT CONSERVATISM DURING AT LEAST 20 MILLION YEARS OF HOST PLANT PURSUIT BY OAK GALLWASPS

(2009) Graham N. Stone et al.   EVOLUTION

Estimating Divergence Parameters With Small Samples From a Large Number of Loci

(2009) Y. Wang et al.   GENETICS

Historical Divergence and Gene Flow in the Genus Zea

(2009) J. Ross-Ibarra et al.   GENETICS

Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines

(2009) P. D. Keightley et al.   GENOME RESEARCH

Speciation inPasserinabuntings: introgression patterns of sex-linked loci identify a candidate gene region for reproductive isolation

(2009) MATTHEW D. CARLING et al.   MOLECULAR ECOLOGY

Non-linear regression models for Approximate Bayesian Computation

(2009) Michael G. B. Blum et al.   STATISTICS AND COMPUTING

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

Inference of Historical Changes in Migration Rate From the Lengths of Migrant Tracts

(2008) J. E. Pool et al.   GENETICS

Patterns of Polymorphism and Demographic History in Natural Populations of Arabidopsis lyrata

(2008) Jeffrey Ross-Ibarra et al.   PLoS One

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Demographic History of European Populations of Arabidopsis thaliana

(2008) Olivier François et al.   PLoS Genetics