Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes

Multiple Stressors in a Changing World: The Need for an Improved Perspective on Physiological Responses to the Dynamic Marine Environment

(2016) Alex R. Gunderson et al.   Annual Review of Marine Science

Copper and nickel effects on survival and growth of northern leopard frog (Lithobates pipiens) tadpoles in field-collected smelting effluent water

(2016) Joël Leduc et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Ecdysone signaling regulates soldier-specific cuticular pigmentation in the termiteZootermopsis nevadensis

(2016) Yudai Masuoka et al.   FEBS LETTERS

Promoter Architecture and Sex-Specific Gene Expression in Daphnia pulex

(2016) R. T. Raborn et al.   GENETICS

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

(2016) Evgeny M. Zdobnov et al.   NUCLEIC ACIDS RESEARCH

Diverse Hormone Response Networks in 41 Independent Drosophila Cell Lines

(2016) Marcus Stoiber et al.   G3-Genes Genomes Genetics

Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors

(2016) Luisa Orsini et al.   Scientific Data

Transcriptome Analysis of Sunflower Genotypes with Contrasting Oxidative Stress Tolerance Reveals Individual- and Combined- Biotic and Abiotic Stress Tolerance Mechanisms

(2016) Vemanna S. Ramu et al.   PLoS One

Lessons from modENCODE

(2015) James B. Brown et al.   Annual Review of Genomics and Human Genetics

Distinct expression profiles of stress defense and DNA repair genes in Daphnia pulex exposed to cadmium, zinc, and quantum dots

(2015) Song Tang et al.   CHEMOSPHERE

Resurrecting complexity: the interplay of plasticity and rapid evolution in the multiple trait response to strong changes in predation pressure in the water fleaDaphnia magna

(2015) Robby Stoks et al.   ECOLOGY LETTERS

Cloning of the Aegiceras corniculatum class I chitinase gene (AcCHI I) and the response of AcCHI I mRNA expression to cadmium stress

(2015) Li-Ying Wang et al.   ECOTOXICOLOGY

Excess copper induced proteomic changes in the marine brown algae Sargassum fusiforme

(2015) Hui-Xi Zou et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Toxicological effects and oxidative stress responses in freshwater snail, Lanistes carinatus, following exposure to chlorpyrifos

(2015) Abdelmonem M. Khalil   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Acute toxicity and sublethal effects of gallic and pelargonic acids on the zebrafish Danio rerio

(2015) Didier Techer et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Acute toxicity of arsenic and oxidative stress responses in the embryonic development of the common South American toadRhinella arenarum

(2015) Mariana Noelia Mardirosian et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Genome-wide identification of lineage-specific genes within Caenorhabditis elegans

(2015) Kun Zhou et al.   GENOMICS

The effects of chronic radiation of gamma ray on protein expression and oxidative stress inBrachypodium distachyon

(2015) Dae Yeon Kim et al.   INTERNATIONAL JOURNAL OF RADIATION BIOLOGY

Induction of chronic oxidative stress, chronic inflammation and aberrant patterns of DNA methylation in the liver of titanium-exposed CBA/CaJ mice

(2015) Witawat Jangiam et al.   INTERNATIONAL JOURNAL OF RADIATION BIOLOGY

ALTERNATIVE OXIDASE1a modulates the oxidative challenge during moderate Cd exposure in Arabidopsis thaliana leaves

(2015) Els Keunen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Rapid evolution of thermal tolerance in the water flea Daphnia

(2015) A. N. Geerts et al.   Nature Climate Change

Cyanobacteria and Algae Blooms: Review of Health and Environmental Data from the Harmful Algal Bloom-Related Illness Surveillance System (HABISS) 2007–2011

(2015) Lorraine Backer et al.   Toxins

Acute and sub-lethal response to mercury in Arctic and boreal calanoid copepods

(2014) Ida Beathe Øverjordet et al.   AQUATIC TOXICOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

An SNP-based second-generation genetic map of Daphnia magna and its application to QTL analysis of phenotypic traits

(2014) Jarkko Routtu et al.   BMC GENOMICS

Functional genomics of acclimation and adaptation in response to thermal stress in Daphnia

(2014) Lev Y Yampolsky et al.   BMC GENOMICS

Transcriptome profiling of genes and pathways associated with arsenic toxicity and tolerance in Arabidopsis

(2014) Shih-Feng Fu et al.   BMC PLANT BIOLOGY

Metabolic and histopathological alterations in the marine bivalve Mytilus galloprovincialis induced by chronic exposure to acrylamide

(2014) Miguel Larguinho et al.   ENVIRONMENTAL RESEARCH

Extinction risk and eco-evolutionary dynamics in a variable environment with increasing frequency of extreme events

(2014) S. Vincenzi   Journal of the Royal Society Interface

Diversity and dynamics of the Drosophila transcriptome

(2014) James B. Brown et al.   NATURE

The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements

(2014) Adrian M. Altenhoff et al.   NUCLEIC ACIDS RESEARCH

InParanoid 8: orthology analysis between 273 proteomes, mostly eukaryotic

(2014) Erik L.L. Sonnhammer et al.   NUCLEIC ACIDS RESEARCH

Diapause-Associated Protein3 Functions as Cu/Zn Superoxide Dismutase in the Chinese Oak Silkworm (Antheraea pernyi)

(2014) Zhenle Bi et al.   PLoS One

Biological ramifications of climate-change-mediated oceanic multi-stressors

(2014) Philip W. Boyd et al.   Nature Climate Change

The role of ROS signaling in cross-tolerance: from model to crop

(2014) Ilse Barrios Perez et al.   Frontiers in Plant Science

Ecological processes and the ecology of stress: the impacts of abiotic environmental factors

(2013) John C. Wingfield   FUNCTIONAL ECOLOGY

Resistance variation within a Daphnia pulex population against toxic cyanobacteria

(2013) Xiaodong Jiang et al.   JOURNAL OF PLANKTON RESEARCH

The evolution of salinity tolerance inDaphnia: a functional genomics approach

(2012) Leigh C. Latta et al.   ECOLOGY LETTERS

Genomic signature of natural and anthropogenic stress in wild populations of the waterfleaDaphnia magna: validation in space, time and experimental evolution

(2012) LUISA ORSINI et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Linking genes to communities and ecosystems: Daphnia as an ecogenomic model

(2012) B. E. Miner et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Physiology of Global Change: Linking Patterns to Mechanisms

(2011) George N. Somero   Annual Review of Marine Science

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

Biomanipulation of hypereutrophic ponds: when it works and why it fails

(2011) Anatoly Peretyatko et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Genotype × genotype interactions between the toxic cyanobacteriumMicrocystisand its grazer, the waterfleaDaphnia

(2011) Veerle Lemaire et al.   Evolutionary Applications

The interplay of past and current stress exposure on the water flea Daphnia

(2011) Mieke Jansen et al.   FUNCTIONAL ECOLOGY

The rise of harmful cyanobacteria blooms: The potential roles of eutrophication and climate change

(2011) J.M. O’Neil et al.   HARMFUL ALGAE

Climate change and evolutionary adaptation

(2011) Ary A. Hoffmann et al.   NATURE

The Ecoresponsive Genome of Daphnia pulex

(2011) J. K. Colbourne et al.   SCIENCE

Adaptation of cells to new environments

(2011) Aaron N. Brooks et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Living in the Now: Physiological Mechanisms to Tolerate a Rapidly Changing Environment

(2010) Gretchen E. Hofmann et al.   Annual Review of Physiology

BioLMiner and the BioCreative II.5 challenge

(2010) Yifei Chen et al.   BMC BIOINFORMATICS

The physiology of climate change: how potentials for acclimatization and genetic adaptation will determine 'winners' and 'losers'

(2010) G. N. Somero   JOURNAL OF EXPERIMENTAL BIOLOGY

Role of temperature in diapause response to fish kairomones in crustacean Daphnia

(2010) Mirosław Slusarczyk et al.   JOURNAL OF INSECT PHYSIOLOGY

An ancient immunity gene duplication in Daphnia magna: RNA expression and sequence analysis of two nitric oxide synthase genes

(2009) Pierrick Labbé et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Transient Genotype-by-Environment Interactions Following Environmental Shock Provide a Source of Expression Variation for Essential Genes

(2009) K. H. Eng et al.   GENETICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Interactions between effects of environmental chemicals and natural stressors: A review

(2009) Martin Holmstrup et al.   SCIENCE OF THE TOTAL ENVIRONMENT

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS