Complete genome and gene expression analyses ofAsaia bogorensisreveal unique responses to culture with mammalian cells as a potential opportunistic human pathogen

Replacement of a terminal cytochrome c oxidase by ubiquinol oxidase during the evolution of acetic acid bacteria

(2014) Minenosuke Matsutani et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Acetic Acid Bacteria Genomes Reveal Functional Traits for Adaptation to Life in Insect Guts

(2014) Bessem Chouaia et al.   Genome Biology and Evolution

Transfer of Gluconacetobacter kakiaceti, Gluconacetobacter medellinensis and Gluconacetobacter maltaceti to the genus Komagataeibacter as Komagataeibacter kakiaceti comb. nov., Komagataeibacter medellinensis comb. nov. and Komagataeibacter maltaceti comb. nov.

(2014) Y. Yamada   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes

(2014) Mikihiko Kawai et al.   Frontiers in Microbiology

TCC: an R package for comparing tag count data with robust normalization strategies

(2013) Jianqiang Sun et al.   BMC BIOINFORMATICS

Complete genome sequence and comparative analysis of Acetobacter pasteurianus 386B, a strain well-adapted to the cocoa bean fermentation ecosystem

(2013) Koen Illeghems et al.   BMC GENOMICS

Draft genomic DNA sequence of the facultatively methylotrophic bacteriumAcidomonas methanolicatype strain MB58

(2013) Norie Higashiura et al.   FEMS MICROBIOLOGY LETTERS

Acidomonas Methanolica-Associated Necrotizing Lymphadenitis in a Patient with Chronic Granulomatous Disease

(2012) John M. Chase et al.   JOURNAL OF CLINICAL IMMUNOLOGY

On the path to uncover the bacterial type II secretion system

(2012) B. Douzi et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The superfamily of heme–copper oxygen reductases: Types and evolutionary considerations

(2011) Filipa L. Sousa et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Ultrafine Cellulose Fibers Produced byAsaia bogorensis, an Acetic Acid Bacterium

(2011) Akio Kumagai et al.   BIOMACROMOLECULES

Evolution in an oncogenic bacterial species with extreme genome plasticity: Helicobacter pylori East Asian genomes

(2011) Mikihiko Kawai et al.   BMC MICROBIOLOGY

Complete Genome Sequence of NBRC 3288, a Unique Cellulose-Nonproducing Strain of Gluconacetobacter xylinus Isolated from Vinegar

(2011) H. Ogino et al.   JOURNAL OF BACTERIOLOGY

Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq

(2011) Hana Yi et al.   NUCLEIC ACIDS RESEARCH

Drosophila Microbiome Modulates Host Developmental and Metabolic Homeostasis via Insulin Signaling

(2011) S. C. Shin et al.   SCIENCE

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Molecular Evidence for Multiple Infections as Revealed by Typing of Asaia Bacterial Symbionts of Four Mosquito Species

(2010) B. Chouaia et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Gluconobacter as Well as Asaia Species, Newly Emerging Opportunistic Human Pathogens among Acetic Acid Bacteria

(2010) C. Alauzet et al.   JOURNAL OF CLINICAL MICROBIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Two genome sequences of the same bacterial strain, Gluconacetobacter diazotrophicus PAl 5, suggest a new standard in genome sequence submission

(2010) Adriana Giongo et al.   Standards in Genomic Sciences

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5

(2009) Marcelo Bertalan et al.   BMC GENOMICS

Small Stress Response Proteins in Escherichia coli: Proteins Missed by Classical Proteomic Studies

(2009) M. R. Hemm et al.   JOURNAL OF BACTERIOLOGY

Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus

(2009) Yoshinao Azuma et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Energy Metabolism of a Unique Acetic Acid Bacterium,Asaia bogorensis, That Lacks Ethanol Oxidation Activity

(2008) Yoshitaka ANO et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes

(2008) H. Noguchi et al.   DNA RESEARCH