Food additives, contaminants and other minor components: effects on human gut microbiota—a review

Nutrition meets the microbiome: micronutrients and the microbiota

(2016) Hans K. Biesalski   Annals of the New York Academy of Sciences

Has provoking microbiota aggression driven the obesity epidemic?

(2016) Benoit Chassaing et al.   BIOESSAYS

The role of microbiota in cancer therapy

(2016) Ernesto Perez-Chanona et al.   CURRENT OPINION IN IMMUNOLOGY

Gut microbiome as a novel cardiovascular therapeutic target

(2016) Vishal Singh et al.   CURRENT OPINION IN PHARMACOLOGY

Gut Microbiota of Nonalcoholic Fatty Liver Disease

(2016) Reham M. Abdou et al.   DIGESTIVE DISEASES AND SCIENCES

Health concerns and management of select veterinary drug residues

(2016) Ronald E. Baynes et al.   FOOD AND CHEMICAL TOXICOLOGY

Antibiotics as deep modulators of gut microbiota: between good and evil

(2016) Gianluca Ianiro et al.   GUT

Degradation of chondroitin sulfate by the gut microbiota of Chinese individuals

(2016) Qingsen Shang et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Different Flavonoids Can Shape Unique Gut Microbiota ProfileIn Vitro

(2016) Jiacheng Huang et al.   JOURNAL OF FOOD SCIENCE

Milk sphingomyelin improves lipid metabolism and alters gut microbiota in high fat diet-fed mice

(2016) Gregory H. Norris et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Pterostilbene-induced changes in gut microbiota composition in relation to obesity

(2016) Usune Etxeberria et al.   MOLECULAR NUTRITION & FOOD RESEARCH

The role of the gut microbiota in NAFLD

(2016) Christopher Leung et al.   Nature Reviews Gastroenterology & Hepatology

The Reciprocal Interactions between Polyphenols and Gut Microbiota and Effects on Bioaccessibility

(2016) Tugba Ozdal et al.   Nutrients

The gut microbiota: a major player in the toxicity of environmental pollutants?

(2016) Sandrine P Claus et al.   npj Biofilms and Microbiomes

Ingestion of Milk Containing Very Low Concentration of Antimicrobials: Longitudinal Effect on Fecal Microbiota Composition in Preweaned Calves

(2016) Richard Van Vleck Pereira et al.   PLoS One

The Gut Microbial Endocrine Organ: Bacterially Derived Signals Driving Cardiometabolic Diseases

(2015) J. Mark Brown et al.   Annual Review of Medicine

Antibiotics and the developing infant gut microbiota and resistome

(2015) Molly K Gibson et al.   CURRENT OPINION IN MICROBIOLOGY

Seeing through the dark: New insights into the immune regulatory functions of vitamin A

(2015) Chrysothemis C. Brown et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Composition and temporal stability of the gut microbiota in older persons

(2015) Ian B Jeffery et al.   ISME Journal

Perinatal antibiotic-induced shifts in gut microbiota have differential effects on inflammatory lung diseases

(2015) Shannon L. Russell et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Use of Antibiotics and Risk of Type 2 Diabetes: A Population-Based Case-Control Study

(2015) Kristian Hallundbæk Mikkelsen et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM

Reshaping faecal gut microbiota composition by the intake of trans-resveratrol and quercetin in high-fat sucrose diet-fed rats

(2015) U. Etxeberria et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Intestinal Microbiota Development in Preterm Neonates and Effect of Perinatal Antibiotics

(2015) Silvia Arboleya et al.   JOURNAL OF PEDIATRICS

Essential oils have different effects on human pathogenic and commensal bacteria in mixed faecal fermentations compared with pure cultures

(2015) Dinesh Thapa et al.   MICROBIOLOGY-SGM

Talking microbes: When gut bacteria interact with diet and host organs

(2015) Patrice D. Cani et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome

(2015) Benoit Chassaing et al.   NATURE

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

(2015) Kristoffer Forslund et al.   NATURE

Gut Microbiome

(2015) Gail A. Cresci et al.   NUTRITION IN CLINICAL PRACTICE

Metabolic effects of non-nutritive sweeteners

(2015) M. Yanina Pepino   PHYSIOLOGY & BEHAVIOR

Linking Microbiota to Human Diseases: A Systems Biology Perspective

(2015) Hao Wu et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment

(2015) Yael R. Nobel et al.   Nature Communications

Metabolic faecal fingerprinting of trans-resveratrol and quercetin following a high-fat sucrose dietary model using liquid chromatography coupled to high-resolution mass spectrometry

(2015) Usune Etxeberria et al.   Food & Function

Chronic Zinc Deficiency Alters Chick Gut Microbiota Composition and Function

(2015) Spenser Reed et al.   Nutrients

Shifts in microbiota species and fermentation products in a dietary model enriched in fat and sucrose

(2015) U. Etxeberria et al.   Beneficial Microbes

Fecal microbiota transplantation: in perspective

(2015) Shaan Gupta et al.   Therapeutic Advances in Gastroenterology

The microbiome of uncontacted Amerindians

(2015) J. C. Clemente et al.   Science Advances

Impact of diet on the human intestinal microbiota

(2015) Huizi Tan et al.   Current Opinion in Food Science

Effect of Antibiotics on Gut Microbiota, Gut Hormones and Glucose Metabolism

(2015) Kristian H. Mikkelsen et al.   PLoS One

Long-term monitoring of the human intestinal microbiota from the 2nd week to 13 years of age

(2014) Akihito Endo et al.   ANAEROBE

Comparing the effects of acute alcohol consumption in germ-free and conventional mice: the role of the gut microbiota

(2014) Canesso MCC et al.   BMC MICROBIOLOGY

Dietary supplementation with lactose or artificial sweetener enhances swine gut Lactobacillus population abundance

(2014) Kristian Daly et al.   BRITISH JOURNAL OF NUTRITION

The Human Gut Microbiome as a Screening Tool for Colorectal Cancer

(2014) J. P. Zackular et al.   Cancer Prevention Research

Dietary Manipulation of Oncogenic MicroRNA Expression in Human Rectal Mucosa: A Randomized Trial

(2014) K. J. Humphreys et al.   Cancer Prevention Research

Immunoglobulin A Coating Identifies Colitogenic Bacteria in Inflammatory Bowel Disease

(2014) Noah W. Palm et al.   CELL

Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences

(2014) Laura M. Cox et al.   CELL

Compositional and Functional Features of the Gastrointestinal Microbiome and Their Effects on Human Health

(2014) Emily B. Hollister et al.   GASTROENTEROLOGY

Early Empiric Antibiotic Use in Preterm Infants Is Associated with Lower Bacterial Diversity and Higher Relative Abundance of Enterobacter

(2014) Corryn Greenwood et al.   JOURNAL OF PEDIATRICS

Alterations of the human gut microbiome in liver cirrhosis

(2014) Nan Qin et al.   NATURE

Persistent gut microbiota immaturity in malnourished Bangladeshi children

(2014) Sathish Subramanian et al.   NATURE

Artificial sweeteners induce glucose intolerance by altering the gut microbiota

(2014) Jotham Suez et al.   NATURE

The gut microbiota, bacterial metabolites and colorectal cancer

(2014) Petra Louis et al.   NATURE REVIEWS MICROBIOLOGY

Short-Term Effect of Antibiotics on Human Gut Microbiota

(2014) Suchita Panda et al.   PLoS One

Low-Dose Aspartame Consumption Differentially Affects Gut Microbiota-Host Metabolic Interactions in the Diet-Induced Obese Rat

(2014) Marie S. A. Palmnäs et al.   PLoS One

Phenolic metabolites and substantial microbiome changes in pig feces by ingesting grape seed proanthocyanidins

(2014) Ying Yng Choy et al.   Food & Function

Effects of resveratrol on gut microbiota and fat storage in a mouse model with high-fat-induced obesity

(2014) Yi Qiao et al.   Food & Function

Dysbiotic Events in Gut Microbiota: Impact on Human Health

(2014) Serena Schippa et al.   Nutrients

The Impact of Diet and Lifestyle on Gut Microbiota and Human Health

(2014) Michael Conlon et al.   Nutrients

Diet or Exercise Interventions vs Combined Behavioral Weight Management Programs: A Systematic Review and Meta-Analysis of Direct Comparisons

(2014) David J. Johns et al.   Journal of the Academy of Nutrition and Dietetics

Antibiotic Administration Routes Significantly Influence the Levels of Antibiotic Resistance in Gut Microbiota

(2013) Lu Zhang et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Intestinal microbiota, diet and health

(2013) Susan E. Power et al.   BRITISH JOURNAL OF NUTRITION

Linking the gut microbiota to human health

(2013) Virginia Robles Alonso et al.   BRITISH JOURNAL OF NUTRITION

Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders

(2013) Elaine Y. Hsiao et al.   CELL

Cometabolism of Microbes and Host: Implications for Drug Metabolism and Drug-Induced Toxicity

(2013) H Li et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Exercise Attenuates PCB-Induced Changes in the Mouse Gut Microbiome

(2013) Jeong June Choi et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

The impact of high dietary zinc oxide on the development of the intestinal microbiota in weaned piglets

(2013) Ingo C. Starke et al.   FEMS MICROBIOLOGY ECOLOGY

Antibiotic treatment during infancy and increased body mass index in boys: an international cross-sectional study

(2013) R Murphy et al.   INTERNATIONAL JOURNAL OF OBESITY

Impact of Polyphenols and Polyphenol-Rich Dietary Sources on Gut Microbiota Composition

(2013) Usune Etxeberria et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Impact of oral vancomycin on gut microbiota, bile acid metabolism, and insulin sensitivity

(2013) Anne Vrieze et al.   JOURNAL OF HEPATOLOGY

Richness of human gut microbiome correlates with metabolic markers

(2013) Emmanuelle Le Chatelier et al.   NATURE

Gut metagenome in European women with normal, impaired and diabetic glucose control

(2013) Fredrik H. Karlsson et al.   NATURE

Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis

(2013) Robert A Koeth et al.   NATURE MEDICINE

Combination of essential oils and antibiotics reduce antibiotic resistance in plasmid-conferred multidrug resistant bacteria

(2013) Polly Soo Xi Yap et al.   PHYTOMEDICINE

Role of Dietary Polyphenols and Inflammatory Processes on Disease Progression Mediated by the Gut Microbiota

(2013) J. Alfredo Martínez et al.   REJUVENATION RESEARCH

Gut–brain axis: how the microbiome influences anxiety and depression

(2013) Jane A. Foster et al.   TRENDS IN NEUROSCIENCES

Gut Pharmacomicrobiomics: the tip of an iceberg of complex interactions between drugs and gut-associated microbes

(2013) Rama Saad et al.   Gut Pathogens

Mom Knows Best: The Universality of Maternal Microbial Transmission

(2013) Lisa J. Funkhouser et al.   PLOS BIOLOGY

The human microbiome as a reservoir of antimicrobial resistance

(2013) John Penders et al.   Frontiers in Microbiology

Dual association between polyphenol intake and breast cancer risk according to alcohol consumption level: a prospective cohort study

(2012) Mathilde Touvier et al.   BREAST CANCER RESEARCH AND TREATMENT

The Impact of the Gut Microbiota on Human Health: An Integrative View

(2012) Jose C. Clemente et al.   CELL

The Effect of Glyphosate on Potential Pathogens and Beneficial Members of Poultry Microbiota In Vitro

(2012) Awad A. Shehata et al.   CURRENT MICROBIOLOGY

Intrarectal Nitric Oxide Administration Prevents Cellular Infiltration but Not Colonic Injury During Dextran Sodium Sulfate Colitis

(2012) Joan Vermeiren et al.   DIGESTIVE DISEASES AND SCIENCES

Impact of chronic exposure to low doses of chlorpyrifos on the intestinal microbiota in the Simulator of the Human Intestinal Microbial Ecosystem (SHIME®) and in the rat

(2012) Claire Joly et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Gut-derived lipopolysaccharide augments adipose macrophage accumulation but is not essential for impaired glucose or insulin tolerance in mice

(2012) Robert Caesar et al.   GUT

Gut microbiota disturbance during antibiotic therapy: a multi-omic approach

(2012) Ana Elena Pérez-Cobas et al.   GUT

Infant antibiotic exposures and early-life body mass

(2012) L Trasande et al.   INTERNATIONAL JOURNAL OF OBESITY

Up-regulating the Human Intestinal Microbiome Using Whole Plant Foods, Polyphenols, and/or Fiber

(2012) Kieran M. Tuohy et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Metabolism of Anthocyanins by Human Gut Microflora and Their Influence on Gut Bacterial Growth

(2012) Maria Hidalgo et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The Use of Low-Calorie Sweeteners by Children: Implications for Weight Management

(2012) John Foreyt et al.   JOURNAL OF NUTRITION

Specific Dietary Preferences Are Linked to Differing Gut Microbial Metabolic Activity in Response to Dark Chocolate Intake

(2012) Francois-Pierre J. Martin et al.   JOURNAL OF PROTEOME RESEARCH

Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10 −/− mice

(2012) Suzanne Devkota et al.   NATURE

Antibiotics in early life alter the murine colonic microbiome and adiposity

(2012) Ilseung Cho et al.   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters

(2012) Susan M. Huse et al.   PLoS One

Challenges in providing credible scientific evidence of health benefits of dietary polyphenols

(2012) Chang Y. Lee   Journal of Functional Foods

Preabsorptive Metabolism of Sodium Arsenate by Anaerobic Microbiota of Mouse Cecum Forms a Variety of Methylated and Thiolated Arsenicals

(2011) Tatyana S. Pinyayev et al.   CHEMICAL RESEARCH IN TOXICOLOGY

Childhood overweight after establishment of the gut microbiota: the role of delivery mode, pre-pregnancy weight and early administration of antibiotics

(2011) T A Ajslev et al.   INTERNATIONAL JOURNAL OF OBESITY

Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease

(2011) Zeneng Wang et al.   NATURE

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Colonization-Induced Host-Gut Microbial Metabolic Interaction

(2011) S. P. Claus et al.   mBio

Prebiotic evaluation of cocoa-derived flavanols in healthy humans by using a randomized, controlled, double-blind, crossover intervention study

(2010) Xenofon Tzounis et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Low levels of faecal lactobacilli in women with iron-deficiency anaemia in south India

(2010) Ramadass Balamurugan et al.   BRITISH JOURNAL OF NUTRITION

Reshaping the gut microbiome with bacterial transplantation and antibiotic intake

(2010) C. Manichanh et al.   GENOME RESEARCH

Translocation of Crohn's disease Escherichia coli across M-cells: contrasting effects of soluble plant fibres and emulsifiers

(2010) C. L. Roberts et al.   GUT

Short-Term Antibiotic Treatment Has Differing Long-Term Impacts on the Human Throat and Gut Microbiome

(2010) Hedvig E. Jakobsson et al.   PLoS One

Vancomycin Treatment of Infective Endocarditis Is Linked with Recently Acquired Obesity

(2010) Franck Thuny et al.   PLoS One

Composition, variability, and temporal stability of the intestinal microbiota of the elderly

(2010) M. J. Claesson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

(2010) L. Dethlefsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reproducible Community Dynamics of the Gastrointestinal Microbiota following Antibiotic Perturbation

(2009) D. A. Antonopoulos et al.   INFECTION AND IMMUNITY

Splenda Alters Gut Microflora and Increases Intestinal P-Glycoprotein and Cytochrome P-450 in Male Rats

(2008) Mohamed B. Abou-Donia et al.   JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH-PART A-CURRENT ISSUES