Genome-wide changes in microRNA expression during short and prolonged heat stress and recovery in contrasting rice cultivars

Rice microRNA osa-miR1848 targets the obtusifoliol 14α-demethylase geneOsCYP51G3and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress

(2015) Kuaifei Xia et al.   NEW PHYTOLOGIST

Expression profiling of iron deficiency responsive microRNAs and gene targets in rice seedlings of Madhukar x Swarna recombinant inbred lines with contrasting levels of iron in seeds

(2015) Surekha Agarwal et al.   PLANT AND SOIL

High-temperature effect on genes engaged in DNA methylation and affected by DNA methylation in Arabidopsis

(2015) Mladen Naydenov et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

miRNAs in the crosstalk between phytohormone signalling pathways

(2014) J. Curaba et al.   JOURNAL OF EXPERIMENTAL BOTANY

Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors

(2014) A. Stief et al.   PLANT CELL

ThemiR156-SPL9-DFRpathway coordinates the relationship between development and abiotic stress tolerance in plants

(2014) Long-Gang Cui et al.   PLANT JOURNAL

Comparative Study of Susceptible and Tolerant Genotype Reveals Efficient Recovery and Root System Contributes to Heat Stress Tolerance in Rice

(2014) B. Sailaja et al.   PLANT MOLECULAR BIOLOGY REPORTER

A Comprehensive Genome-Wide Study on Tissue-Specific and Abiotic Stress-Specific miRNAs in Triticum aestivum

(2014) Ritu Pandey et al.   PLoS One

Heat-Induced Release of Epigenetic Silencing Reveals the Concealed Role of an Imprinted Plant Gene

(2014) Diego H. Sanchez et al.   PLoS Genetics

Construction of small RNA-mediated gene regulatory networks in the roots of rice (Oryza sativa)

(2013) Xiaoxia Ma et al.   BMC GENOMICS

Evolution of variety-specific regulatory schema for expression of osa-miR408 inindicarice varieties under drought stress

(2013) Roseeta D. Mutum et al.   FEBS Journal

The role of rice microRNAs in abiotic stress responses

(2013) Dong-Hoon Jeong et al.   JOURNAL OF PLANT BIOLOGY

Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching

(2013) Yu-Chan Zhang et al.   NATURE BIOTECHNOLOGY

APETALA2/Ethylene Responsive Factor (AP2/ERF) transcription factors: mediators of stress responses and developmental programs

(2013) Francesco Licausi et al.   NEW PHYTOLOGIST

Identification and Functional Analysis of Flowering Related microRNAs in Common Wild Rice (Oryza rufipogon Griff.)

(2013) Zongxiang Chen et al.   PLoS One

High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice

(2012) Blanca E Barrera-Figueroa et al.   BMC PLANT BIOLOGY

Identification and profiling of arsenic stress-induced microRNAs inBrassica juncea

(2012) Sudhakar Srivastava et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genomic dissection of small RNAs in wild rice (Oryza rufipogon): lessons for rice domestication

(2012) Yu Wang et al.   NEW PHYTOLOGIST

Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza sativa)

(2012) Lu-jun Yu et al.   NEW PHYTOLOGIST

NO APICAL MERISTEM (MtNAM) regulates floral organ identity and lateral organ separation in Medicago truncatula

(2012) Xiaofei Cheng et al.   NEW PHYTOLOGIST

Comparative Analysis of Benzoxazinoid Biosynthesis in Monocots and Dicots: Independent Recruitment of Stabilization and Activation Functions

(2012) R. Dick et al.   PLANT CELL

High-Throughput Sequencing and Characterization of the Small RNA Transcriptome Reveal Features of Novel and Conserved MicroRNAs in Panax ginseng

(2012) Bin Wu et al.   PLoS One

Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum

(2011) Li Zhang et al.   GENOMICS

Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa)

(2011) Yanfei Ding et al.   JOURNAL OF EXPERIMENTAL BOTANY

miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments

(2011) M. Hackenberg et al.   NUCLEIC ACIDS RESEARCH

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Bio-available zinc in rice seeds is increased by activation tagging of nicotianamine synthase

(2011) Sichul Lee et al.   PLANT BIOTECHNOLOGY JOURNAL

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

(2011) Xianwei Song et al.   PLANT JOURNAL

Gitools: Analysis and Visualisation of Genomic Data Using Interactive Heat-Maps

(2011) Christian Perez-Llamas et al.   PLoS One

DNA Methylation Mediated by a MicroRNA Pathway

(2010) Liang Wu et al.   MOLECULAR CELL

Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application

(2010) Turgay Unver et al.   MOLECULAR GENETICS AND GENOMICS

Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)

(2010) Tian Li et al.   NUCLEIC ACIDS RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Identification of novel and candidate miRNAs in rice by high throughput sequencing

(2008) Ramanjulu Sunkar et al.   BMC PLANT BIOLOGY

A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains

(2008) Q.-H. Zhu et al.   GENOME RESEARCH