Lipids in membrane dynamics during autophagy in plants

Sensing Membrane Curvature in Macroautophagy

(2017) Nathan Nguyen et al.   JOURNAL OF MOLECULAR BIOLOGY

Entire Photodamaged Chloroplasts Are Transported to the Central Vacuole by Autophagy

(2017) Masanori Izumi et al.   PLANT CELL

ATG9 regulates autophagosome progression from the endoplasmic reticulum inArabidopsis

(2017) Xiaohong Zhuang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

hfAIM: A reliable bioinformatics approach for in silico genome-wide identification of autophagy-associated Atg8-interacting motifs in various organisms

(2016) Qingjun Xie et al.   Autophagy

Arabidopsis NAP1 Regulates the Formation of Autophagosomes

(2016) Pengwei Wang et al.   CURRENT BIOLOGY

Structure and function of the ULK1 complex in autophagy

(2016) Mary G Lin et al.   CURRENT OPINION IN CELL BIOLOGY

Lipid droplet–mediated ER homeostasis regulates autophagy and cell survival during starvation

(2016) Ariadna P. Velázquez et al.   JOURNAL OF CELL BIOLOGY

PtdIns(4,5)P2signaling regulates ATG14 and autophagy

(2016) Xiaojun Tan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant phospholipases D and C and their diverse functions in stress responses

(2016) Yueyun Hong et al.   PROGRESS IN LIPID RESEARCH

The ATG conjugation systems are important for degradation of the inner autophagosomal membrane

(2016) Kotaro Tsuboyama et al.   SCIENCE

Complex Relations Between Phospholipids, Autophagy, and Neutral Lipids

(2016) Oren Shatz et al.   TRENDS IN BIOCHEMICAL SCIENCES

Stitching Organelles: Organization and Function of Specialized Membrane Contact Sites in Plants

(2016) Jessica Pérez-Sancho et al.   TRENDS IN CELL BIOLOGY

The Atg1–kinase complex tethers Atg9-vesicles to initiate autophagy

(2016) Yijian Rao et al.   Nature Communications

HS1BP3 negatively regulates autophagy by modulation of phosphatidic acid levels

(2016) Petter Holland et al.   Nature Communications

Sec24 phosphorylation regulates autophagosome abundance during nutrient deprivation

(2016) Saralin Davis et al.   eLife

Endocytic and autophagic pathways crosstalk in plants

(2015) Xiaohong Zhuang et al.   CURRENT OPINION IN PLANT BIOLOGY

Lipid droplets and their component triglycerides and steryl esters regulate autophagosome biogenesis

(2015) T. Shpilka et al.   EMBO JOURNAL

FYCO1 Contains a C-terminally Extended, LC3A/B-preferring LC3-interacting Region (LIR) Motif Required for Efficient Maturation of Autophagosomes during Basal Autophagy

(2015) Hallvard L. Olsvik et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

WIPI proteins: essential PtdIns3P effectors at the nascent autophagosome

(2015) T. Proikas-Cezanne et al.   JOURNAL OF CELL SCIENCE

Membrane dynamics in autophagosome biogenesis

(2015) S. R. Carlsson et al.   JOURNAL OF CELL SCIENCE

Methods for analysis of autophagy in plants

(2015) Diane C. Bassham   METHODS

Rapid Mitogenic Regulation of the mTORC1 Inhibitor, DEPTOR, by Phosphatidic Acid

(2015) Mee-Sup Yoon et al.   MOLECULAR CELL

ATG14 promotes membrane tethering and fusion of autophagosomes to endolysosomes

(2015) Jiajie Diao et al.   NATURE

CapZ regulates autophagosomal membrane shaping by promoting actin assembly inside the isolation membrane

(2015) Na Mi et al.   NATURE CELL BIOLOGY

Phospholipase Dε enhancesBraasca napusgrowth and seed production in response to nitrogen availability

(2015) Shaoping Lu et al.   PLANT BIOTECHNOLOGY JOURNAL

The Endosomal Protein CHARGED MULTIVESICULAR BODY PROTEIN1 Regulates the Autophagic Turnover of Plastids in Arabidopsis

(2015) Christoph Spitzer et al.   PLANT CELL

Dual roles of anArabidopsisESCRT component FREE1 in regulating vacuolar protein transport and autophagic degradation

(2015) Caiji Gao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How to control self-digestion: transcriptional, post-transcriptional, and post-translational regulation of autophagy

(2015) Yuchen Feng et al.   TRENDS IN CELL BIOLOGY

Lipin-1 regulates cancer cell phenotype and is a potential target to potentiate rapamycin treatment

(2015) Laura Brohée et al.   Oncotarget

OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development

(2014) Takamitsu Kurusu et al.   Autophagy

Molecular Mechanism of Autophagic Membrane-Scaffold Assembly and Disassembly

(2014) Anna Kaufmann et al.   CELL

Neutral Lipid Stores and Lipase PNPLA5 Contribute to Autophagosome Biogenesis

(2014) Nicolas Dupont et al.   CURRENT BIOLOGY

Mitochondrial ER Contacts Are Crucial for Mitophagy in Yeast

(2014) Stefan Böckler et al.   DEVELOPMENTAL CELL

Delayed degradation of chlorophylls and photosynthetic proteins in Arabidopsis autophagy mutants during stress-induced leaf yellowing

(2014) Yasuhito Sakuraba et al.   JOURNAL OF EXPERIMENTAL BOTANY

WIPI2 Links LC3 Conjugation with PI3P, Autophagosome Formation, and Pathogen Clearance by Recruiting Atg12–5-16L1

(2014) Hannah C. Dooley et al.   MOLECULAR CELL

A Revised Assay for Monitoring Autophagic Flux in Arabidopsis thaliana Reveals Involvement of AUTOPHAGY-RELATED9 in Autophagy

(2014) Kwang Deok Shin et al.   MOLECULES AND CELLS

Lipidation of the LC3/GABARAP family of autophagy proteins relies on a membrane-curvature-sensing domain in Atg3

(2014) Sangeeta Nath et al.   NATURE CELL BIOLOGY

Assessment and Optimization of Autophagy Monitoring Methods in Arabidopsis Roots Indicate Direct Fusion of Autophagosomes with Vacuoles

(2014) Ekaterina A. Merkulova et al.   PLANT AND CELL PHYSIOLOGY

AUTOPHAGY-RELATED11 Plays a Critical Role in General Autophagy- and Senescence-Induced Mitophagy in Arabidopsis

(2014) F. Li et al.   PLANT CELL

ATG5 defines a phagophore domain connected to the endoplasmic reticulum during autophagosome formation in plants

(2014) Romain Le Bars et al.   Nature Communications

Phosphatidylinositol 3-kinase and COPII generate LC3 lipidation vesicles from the ER-Golgi intermediate compartment

(2014) Liang Ge et al.   eLife

Functional role of cardiolipin in mitochondrial bioenergetics

(2013) Giuseppe Paradies et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

The Role of Lipids in the Control of Autophagy

(2013) Claudia Dall'Armi et al.   CURRENT BIOLOGY

ER–PM connections: sites of information transfer and inter-organelle communication

(2013) Christopher J Stefan et al.   CURRENT OPINION IN CELL BIOLOGY

Autophagic Processes in Yeast: Mechanism, Machinery and Regulation

(2013) F. Reggiori et al.   GENETICS

Membrane remodeling by the PX-BAR protein SNX18 promotes autophagosome formation

(2013) Helene Knævelsrud et al.   JOURNAL OF CELL BIOLOGY

Autophagosomes form at ER–mitochondria contact sites

(2013) Maho Hamasaki et al.   NATURE

A BAR-Domain Protein SH3P2, Which Binds to Phosphatidylinositol 3-Phosphate and ATG8, Regulates Autophagosome Formation in Arabidopsis

(2013) X. Zhuang et al.   PLANT CELL

A HORMA domain in Atg13 mediates PI 3-kinase recruitment in autophagy

(2013) C. C. Jao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential processing of Arabidopsis ubiquitin-like Atg8 autophagy proteins by Atg4 cysteine proteases

(2013) J. Woo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Importance of the hexagonal lipid phase in biological membrane organization

(2013) Juliette Jouhet   Frontiers in Plant Science

Lipid Droplets and Cellular Lipid Metabolism

(2012) Tobias C. Walther et al.   Annual Review of Biochemistry

Autophagy: Pathways for Self-Eating in Plant Cells

(2012) Yimo Liu et al.   Annual Review of Plant Biology

Architecture of the Atg17 Complex as a Scaffold for Autophagosome Biogenesis

(2012) Michael J. Ragusa et al.   CELL

SnapShot: Membrane Curvature Sensors and Generators

(2012) Hongying Shen et al.   CELL

Phosphatidylinositol-3-Phosphate Clearance Plays a Key Role in Autophagosome Completion

(2012) Eduardo Cebollero et al.   CURRENT BIOLOGY

Mechanism and functions of membrane binding by the Atg5-Atg12/Atg16 complex during autophagosome formation

(2012) Julia Romanov et al.   EMBO JOURNAL

Phosphatidylinositol 4-Kinases Are Required for Autophagic Membrane Trafficking

(2012) Ke Wang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genes for plant Autophagy: Functions and interactions

(2012) Soon-Hee Kim et al.   MOLECULES AND CELLS

Role of phosphatidic acid in plant galactolipid synthesis

(2011) Emmanuelle Dubots et al.   BIOCHIMIE

SNARE Proteins Are Required for Macroautophagy

(2011) Usha Nair et al.   CELL

Phosphatidic Acid Activates Mammalian Target of Rapamycin Complex 1 (mTORC1) Kinase by Displacing FK506 Binding Protein 38 (FKBP38) and Exerting an Allosteric Effect

(2011) Mee-Sup Yoon et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The ATG1/ATG13 Protein Kinase Complex Is Both a Regulator and a Target of Autophagic Recycling in Arabidopsis

(2011) A. Suttangkakul et al.   PLANT CELL

Variations on a theme: plant autophagy in comparison to yeast and mammals

(2011) Tamar Avin-Wittenberg et al.   PROTOPLASMA

A Diacylglycerol-Dependent Signaling Pathway Contributes to Regulation of Antibacterial Autophagy

(2010) Shahab Shahnazari et al.   Cell Host & Microbe

FYCO1 is a Rab7 effector that binds to LC3 and PI3P to mediate microtubule plus end–directed vesicle transport

(2010) Serhiy Pankiv et al.   JOURNAL OF CELL BIOLOGY

Overexpression of Arabidopsis Acyl-CoA Binding Protein ACBP3 Promotes Starvation-Induced and Age-Dependent Leaf Senescence

(2010) S. Xiao et al.   PLANT CELL

The phospholipase D1 pathway modulates macroautophagy

(2010) Claudia Dall'Armi et al.   Nature Communications

Lipophagy: Selective Catabolism Designed for Lipids

(2009) Hilla Weidberg et al.   DEVELOPMENTAL CELL

Complex Lipid Requirements for SNARE- and SNARE Chaperone-dependent Membrane Fusion

(2009) Joji Mima et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Distinct regulation of autophagic activity by Atg14L and Rubicon associated with Beclin 1–phosphatidylinositol-3-kinase complex

(2009) Yun Zhong et al.   NATURE CELL BIOLOGY

Dynamics of vacuoles and actin filaments in guard cells and their roles in stomatal movement

(2009) XIN-QI GAO et al.   PLANT CELL AND ENVIRONMENT

Phospholipase Dε and phosphatidic acid enhance Arabidopsis nitrogen signaling and growth

(2009) Yueyun Hong et al.   PLANT JOURNAL

Glucosylceramide Biosynthesis is Involved in Golgi Morphology and Protein Secretion in Plant Cells

(2009) Su Melser et al.   TRAFFIC

Transport of phosphatidylinositol 3-phosphate into the vacuole via autophagic membranes in Saccharomyces cerevisiae

(2008) Keisuke Obara et al.   GENES TO CELLS

Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum

(2008) Elizabeth L. Axe et al.   JOURNAL OF CELL BIOLOGY

Atg8 Controls Phagophore Expansion during Autophagosome Formation

(2008) Zhiping Xie et al.   MOLECULAR BIOLOGY OF THE CELL

Membrane lipids: where they are and how they behave

(2008) Gerrit van Meer et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY