Single Cell Analysis Linking Ribosomal (r)DNA and rRNA Copy Numbers to Cell Size and Growth Rate Provides Insights into Molecular Protistan Ecology

Interactions between growth-dependent changes in cell size, nutrient supply and cellular elemental stoichiometry of marine Synechococcus

(2016) Nathan S Garcia et al.   ISME Journal

Diversity and Dynamics of Active Small Microbial Eukaryotes in the Anoxic Zone of a Freshwater Meromictic Lake (Pavin, France)

(2016) Cécile Lepère et al.   Frontiers in Microbiology

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

(2015) Ramon Massana et al.   ENVIRONMENTAL MICROBIOLOGY

rRNA and rDNA based assessment of sea ice protist biodiversity from the central Arctic Ocean

(2015) Anique Stecher et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Temperature and the biogeography of algal stoichiometry

(2015) Gabriel Yvon-Durocher et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Aquatic heterotrophic bacteria have highly flexible phosphorus content and biomass stoichiometry

(2015) Casey M Godwin et al.   ISME Journal

Patterns of Rare and Abundant Marine Microbial Eukaryotes

(2014) Ramiro Logares et al.   CURRENT BIOLOGY

Validation of the detection of Alexandrium species using specific RNA probes tested in a microarray format: Calibration of signal using variability of RNA content with environmental conditions

(2014) Joe D. Taylor et al.   HARMFUL ALGAE

Validation of the detection of Pseudo-nitzschia spp. using specific RNA probes tested in a microarray format: Calibration of signal based on variability of RNA content with environmental conditions

(2014) Linda K. Medlin et al.   HARMFUL ALGAE

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development

(2014) Steven F. Stoddard et al.   NUCLEIC ACIDS RESEARCH

Ribosomal DNA copy number is coupled with gene expression variation and mitochondrial abundance in humans

(2014) John G. Gibbons et al.   Nature Communications

Phylogenetic constraints on elemental stoichiometry and resource allocation in heterotrophic marine bacteria

(2013) Amy E. Zimmerman et al.   ENVIRONMENTAL MICROBIOLOGY

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

Ecological stoichiometry: An elementary approach using basic principles

(2013) Dag O. Hessen et al.   LIMNOLOGY AND OCEANOGRAPHY

Can Abundance of Protists Be Inferred from Sequence Data: A Case Study of Foraminifera

(2013) Alexandra A-T. Weber et al.   PLoS One

Extremely High Copy Numbers and Polymorphisms of the rDNA Operon Estimated from Single Cell Analysis of Oligotrich and Peritrich Ciliates

(2013) Jun Gong et al.   PROTIST

Achieving temperature-size changes in a unicellular organism

(2012) Jack Forster et al.   ISME Journal

RIBOSOMAL DNA IS DIFFERENTIALLY AMPLIFIED ACROSS LIFE-CYCLE STAGES IN THE FORAMINIFER ALLOGROMIA LATICOLLARIS STRAIN CSH

(2012) L. W. Parfrey et al.   JOURNAL OF FORAMINIFERAL RESEARCH

Ribosomal DNA Deletions Modulate Genome-Wide Gene Expression: “rDNA–Sensitive” Genes and Natural Variation

(2011) Silvana Paredes et al.   PLoS Genetics

Element content of Ochromonas danica: a replicated chemostat study controlling the growth rate and temperature

(2010) Savannah Simonds et al.   FEMS MICROBIOLOGY ECOLOGY

Element content of Pseudomonas fluorescens varies with growth rate and temperature: A replicated chemostat study addressing ecological stoichiometry

(2010) Thomas H. Chrzanowski et al.   LIMNOLOGY AND OCEANOGRAPHY

Single-cell gene expression profiling using reverse transcription quantitative real-time PCR

(2010) Anders Ståhlberg et al.   METHODS

Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms

(2010) RALPH MEDINGER et al.   MOLECULAR ECOLOGY

Dormancy contributes to the maintenance of microbial diversity

(2010) S. E. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Abundance of Ribosomal RNA Gene Copies Maintains Genome Integrity

(2010) S. Ide et al.   SCIENCE

Analysis of rRNA gene content in the Mediterranean dinoflagellate Alexandrium catenella and Alexandrium taylori: implications for the quantitative real-time PCR-based monitoring methods

(2009) Luca Galluzzi et al.   JOURNAL OF APPLIED PHYCOLOGY

Strain-Dependent Variation in 18S Ribosomal DNA Copy Numbers in Aspergillus fumigatus

(2009) M. L. Herrera et al.   JOURNAL OF CLINICAL MICROBIOLOGY

IS THE GROWTH RATE HYPOTHESIS APPLICABLE TO MICROALGAE?1

(2009) Kevin J. Flynn et al.   JOURNAL OF PHYCOLOGY

New Insights into the Diversity of Marine Picoeukaryotes

(2009) Fabrice Not et al.   PLoS One

Global warming benefits the small in aquatic ecosystems

(2009) M. Daufresne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantification of Diatom and Dinoflagellate Biomasses in Coastal Marine Seawater Samples by Real-Time PCR

(2008) A. Godhe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantification of mRNA in single cells and modelling of RT-qPCR induced noise

(2008) Martin Bengtsson et al.   BMC MOLECULAR BIOLOGY

Metagenomic retrieval of a ribosomal DNA repeat array from an uncultured marine alveolate

(2008) Ramon Massana et al.   ENVIRONMENTAL MICROBIOLOGY

Distribution of the uncultured protist MAST-4 in the Indian Ocean, Drake Passage and Mediterranean Sea assessed by real-time quantitative PCR

(2008) Raquel Rodríguez-Martínez et al.   ENVIRONMENTAL MICROBIOLOGY

Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon

(2008) Luis R Comolli et al.   ISME Journal

CORRELATED EVOLUTION OF GENOME SIZE AND CELL VOLUME IN DIATOMS (BACILLARIOPHYCEAE)

(2008) Jessica A. Connolly et al.   JOURNAL OF PHYCOLOGY

The Dynamic Nature of Eukaryotic Genomes

(2008) L. W. Parfrey et al.   MOLECULAR BIOLOGY AND EVOLUTION