Admixture on the northern front: population genomics of range expansion in the white-footed mouse (Peromyscus leucopus) and secondary contact with the deer mouse (Peromyscus maniculatus)

Microsatellite markers reveal low frequency of natural hybridization between the white-footed mouse (Peromyscus leucopus) and deer mouse (Peromyscus maniculatus) in southern Quebec, Canada

(2017) Sarah S.T. Leo et al.   GENOME

Expansion Under Climate Change: The Genetic Consequences

(2016) Jimmy Garnier et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Stress level, parasite load, and movement pattern in a small-mammal reservoir host for Lyme disease

(2016) J. Gaitan et al.   CANADIAN JOURNAL OF ZOOLOGY

Population genomics of the Anthropocene: urbanization is negatively associated with genome-wide variation in white-footed mouse populations

(2016) Jason Munshi-South et al.   Evolutionary Applications

Population and Evolutionary Genomics ofAmblyomma americanum, an Expanding Arthropod Disease Vector

(2016) Javier D. Monzón et al.   Genome Biology and Evolution

Interspecific Y chromosome variation is sufficient to rescue hybrid male sterility and is influenced by the grandparental origin of the chromosomes

(2016) L O Araripe et al.   HEREDITY

Differential introgression and reorganization of retrotransposons in hybrid zones between wild wheats

(2016) Natacha Senerchia et al.   MOLECULAR ECOLOGY

Admixture mapping identifies introgressed genomic regions in North American canids

(2016) Bridgett M. vonHoldt et al.   MOLECULAR ECOLOGY

Genomics of hybridization and its evolutionary consequences

(2016) Richard J. Abbott et al.   MOLECULAR ECOLOGY

The programstructuredoes not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem

(2016) Sebastien J. Puechmaille   Molecular Ecology Resources

Genomic analysis of Andamanese provides insights into ancient human migration into Asia and adaptation

(2016) Mayukh Mondal et al.   NATURE GENETICS

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Hybridization as a facilitator of species range expansion

(2016) Karin S. Pfennig et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Tangled Evolutionary Legacies of Range Expansion and Hybridization

(2016) Daniele Canestrelli et al.   TRENDS IN ECOLOGY & EVOLUTION

Bioinformatic processing of RAD-seq data dramatically impacts downstream population genetic inference

(2016) Aaron B. A. Shafer et al.   Methods in Ecology and Evolution

Dynamics of mtDNA introgression during species range expansion: insights from an experimental longitudinal study

(2016) V. Mastrantonio et al.   Scientific Reports

Pseudo-Reference-Based Assembly of Vertebrate Transcriptomes

(2016) Kyoungwoo Nam et al.   Genes

Demographic inferences using short-read genomic data in an approximate Bayesian computation framework: in silico evaluation of power, biases and proof of concept in Atlantic walrus

(2015) Aaron B. A. Shafer et al.   MOLECULAR ECOLOGY

Highly variable reproductive isolation among pairs ofCatostomusspecies

(2015) Elizabeth G. Mandeville et al.   MOLECULAR ECOLOGY

Genomic evidence of geographically widespread effect of gene flow from polar bears into brown bears

(2015) James A. Cahill et al.   MOLECULAR ECOLOGY

Neutral and adaptive genomic signatures of rapid poleward range expansion

(2015) J. Swaegers et al.   MOLECULAR ECOLOGY

An early modern human from Romania with a recent Neanderthal ancestor

(2015) Qiaomei Fu et al.   NATURE

Distance from sub-Saharan Africa predicts mutational load in diverse human genomes

(2015) Brenna M. Henn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hybrid zones: windows on climate change

(2015) Scott A. Taylor et al.   TRENDS IN ECOLOGY & EVOLUTION

Spatial sorting promotes the spread of maladaptive hybridization

(2015) Winsor H. Lowe et al.   TRENDS IN ECOLOGY & EVOLUTION

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms

(2015) Daniel Money et al.   G3-Genes Genomes Genetics

Phylogeographic Structure of the White-Footed Mouse and the Deer Mouse, Two Lyme Disease Reservoir Hosts in Québec

(2015) Jessica Fiset et al.   PLoS One

Spatiotemporally consistent genomic signatures of reproductive isolation in a moving hybrid zone

(2014) Scott A. Taylor et al.   EVOLUTION

Landscape resistance and habitat combine to provide an optimal model of genetic structure and connectivity at the range margin of a small mammal

(2014) R. R. Marrotte et al.   MOLECULAR ECOLOGY

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

(2014) Emilia Huerta-Sánchez et al.   NATURE

Spatial Genetic Structure Patterns of Phenotype-Limited and Boundary-Limited Expanding Populations: A Simulation Study

(2014) Qiang Dai et al.   PLoS One

Hybridization in a warmer world

(2014) Amanda J. Chunco   Ecology and Evolution

The population structure and recent colonization history of Oregon threespine stickleback determined using restriction-site associated DNA-sequencing

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Adaptive evolution during an ongoing range expansion: the invasive bank vole (Myodes glareolus) in Ireland

(2013) Thomas A. White et al.   MOLECULAR ECOLOGY

On the accumulation of deleterious mutations during range expansions

(2013) S. Peischl et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation

(2013) Philip W. Hedrick   MOLECULAR ECOLOGY

Signatures of Rapid Evolution in Urban and Rural Transcriptomes of White-Footed Mice (Peromyscus leucopus) in the New York Metropolitan Area

(2013) Stephen E. Harris et al.   PLoS One

Poleward Expansion of the White-Footed Mouse (Peromyscus leucopus) under Climate Change: Implications for the Spread of Lyme Disease

(2013) Emilie Roy-Dufresne et al.   PLoS One

Genetic structure of the white-footed mouse in the context of the emergence of Lyme disease in southern Québec

(2013) Anita Rogic et al.   Ecology and Evolution

Congruent morphological and genetic differentiation as a signature of range expansion in a fragmented landscape

(2013) Ronan Ledevin et al.   Ecology and Evolution

Serial Founder Effects During Range Expansion: A Spatial Analog of Genetic Drift

(2012) M. Slatkin et al.   GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Broken barriers: Human-induced changes to gene flow and introgression in animals

(2011) Erika Crispo et al.   BIOESSAYS

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

(2011) David H Alexander et al.   BMC BIOINFORMATICS

Adaptive Introgression of Anticoagulant Rodent Poison Resistance by Hybridization between Old World Mice

(2011) Ying Song et al.   CURRENT BIOLOGY

GENETIC VARIATION FOR POSTZYGOTIC REPRODUCTIVE ISOLATION BETWEEN CAENORHABDITIS BRIGGSAE AND CAENORHABDITIS SP. 9

(2011) Joanna L. Kozlowska et al.   EVOLUTION

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

The effect of SNP discovery method and sample size on estimation of population genetic data for Chinese and Indian rhesus macaques (Macaca mulatta)

(2011) Jessica A. Satkoski Trask et al.   PRIMATES

An evolutionary process that assembles phenotypes through space rather than through time

(2011) R. Shine et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid Range Shifts of Species Associated with High Levels of Climate Warming

(2011) I.-C. Chen et al.   SCIENCE

The polymorphic prelude to Bateson–Dobzhansky–Muller incompatibilities

(2011) Asher D. Cutter   TRENDS IN ECOLOGY & EVOLUTION

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Pursuing glacier retreat: genetic structure of a rapidly expanding Larix decidua population

(2010) ANDREA R. PLUESS   MOLECULAR ECOLOGY

The Arctic melting pot

(2010) Brendan P. Kelly et al.   NATURE

Genetic Consequences of Range Expansions

(2009) Laurent Excoffier et al.   Annual Review of Ecology Evolution and Systematics

Genotype Imputation

(2009) Yun Li et al.   Annual Review of Genomics and Human Genetics

THE BIOLOGY OF SPECIATION

(2009) James M. Sobel et al.   EVOLUTION

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Climate-induced changes in the small mammal communities of the Northern Great Lakes Region

(2009) PHILIP MYERS et al.   GLOBAL CHANGE BIOLOGY

A Genealogical Interpretation of Principal Components Analysis

(2009) Gil McVean   PLoS Genetics

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Why sampling scheme matters: the effect of sampling scheme on landscape genetic results

(2008) Michael K. Schwartz et al.   CONSERVATION GENETICS

Interpreting principal component analyses of spatial population genetic variation

(2008) John Novembre et al.   NATURE GENETICS

Surfing during population expansions promotes genetic revolutions and structuration

(2008) Laurent Excoffier et al.   TRENDS IN ECOLOGY & EVOLUTION