Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome
出版年份 2017 全文链接
标题
Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome
作者
关键词
-
出版物
GENOME RESEARCH
Volume 28, Issue 2, Pages 231-242
出版商
Cold Spring Harbor Laboratory
发表日期
2017-12-02
DOI
10.1101/gr.230516.117
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Intron retention as a component of regulated gene expression programs
- (2017) Aishwarya G. Jacob et al. HUMAN GENETICS
- Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis
- (2017) Sayed Mohammad Ebrahim Sahraeian et al. Nature Communications
- Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing
- (2016) Xinping Yang et al. CELL
- Chromatin environment, transcriptional regulation, and splicing distinguish lincRNAs and mRNAs
- (2016) Marta Melé et al. GENOME RESEARCH
- Haplotyping germline and cancer genomes with high-throughput linked-read sequencing
- (2016) Grace X Y Zheng et al. NATURE BIOTECHNOLOGY
- The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
- (2016) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- Benchmarking of the Oxford Nanopore MinION sequencing for quantitative and qualitative assessment of cDNA populations
- (2016) Spyros Oikonomopoulos et al. Scientific Reports
- Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events
- (2015) Hagen Tilgner et al. NATURE BIOTECHNOLOGY
- Assessing long-distance RNA sequence connectivity via RNA-templated DNA–DNA ligation
- (2015) Christian K Roy et al. eLife
- Widespread intron retention in mammals functionally tunes transcriptomes
- (2014) Ulrich Braunschweig et al. GENOME RESEARCH
- Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study
- (2014) Sheng Li et al. NATURE BIOTECHNOLOGY
- Targeted Combinatorial Alternative Splicing Generates Brain Region-Specific Repertoires of Neurexins
- (2014) Dietmar Schreiner et al. NEURON
- Defining a personal, allele-specific, and single-molecule long-read transcriptome
- (2014) Hagen Tilgner et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cartography of neurexin alternative splicing mapped by single-molecule long-read mRNA sequencing
- (2014) Barbara Treutlein et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples
- (2013) Jonas Behr et al. BIOINFORMATICS
- A single-molecule long-read survey of the human transcriptome
- (2013) Donald Sharon et al. NATURE BIOTECHNOLOGY
- DNase I–hypersensitive exons colocalize with promoters and distal regulatory elements
- (2013) Tim R Mercer et al. NATURE GENETICS
- Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease
- (2013) Jean-Charles Lambert et al. NATURE GENETICS
- Assessment of transcript reconstruction methods for RNA-seq
- (2013) Tamara Steijger et al. NATURE METHODS
- Characterization of the human ESC transcriptome by hybrid sequencing
- (2013) K. F. Au et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Accurate Identification and Analysis of Human mRNA Isoforms Using Deep Long Read Sequencing
- (2013) Hagen Tilgner et al. G3-Genes Genomes Genetics
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
- (2012) H. Tilgner et al. GENOME RESEARCH
- High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
- (2012) P. Batut et al. GENOME RESEARCH
- The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- (2012) T. Derrien et al. GENOME RESEARCH
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Hybrid error correction and de novo assembly of single-molecule sequencing reads
- (2012) Sergey Koren et al. NATURE BIOTECHNOLOGY
- Improving PacBio Long Read Accuracy by Short Read Alignment
- (2012) Kin Fai Au et al. PLoS One
- The birth of the Epitranscriptome: deciphering the function of RNA modifications
- (2012) Yogesh Saletore et al. GENOME BIOLOGY
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB
- (2010) Miriam Llorian et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells
- (2009) Christine Mayr et al. CELL
- Long non-coding RNAs: insights into functions
- (2009) Tim R. Mercer et al. NATURE REVIEWS GENETICS
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
- Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
- (2008) Qun Pan et al. NATURE GENETICS
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
- Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites
- (2008) R. Sandberg et al. SCIENCE
- The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
- (2008) U. Nagalakshmi et al. SCIENCE
- Real-Time DNA Sequencing from Single Polymerase Molecules
- (2008) J. Eid et al. SCIENCE
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now