Dominance and Sexual Dimorphism Pervade the Salix purpurea L. Transcriptome

A mixed model approach for evaluating yield improvements in interspecific hybrids of shrub willow, a dedicated bioenergy crop

(2017) Eric S. Fabio et al.   INDUSTRIAL CROPS AND PRODUCTS

Sexual homomorphism in dioecious trees: extensive tests fail to detect sexual dimorphism in Populus †

(2017) Athena D. McKown et al.   Scientific Reports

How does long-term complete submergence influence sex ratio and resource allocation of a dioecious shrub, Salix variegata Franch.?

(2016) Xiaolei Su et al.   ECOLOGICAL ENGINEERING

Genotype × environment interaction analysis of North American shrub willow yield trials confirms superior performance of triploid hybrids

(2016) Eric S. Fabio et al.   Global Change Biology Bioenergy

MYB transcription factor gene involved in sex determination inAsparagus officinalis

(2016) Kohji Murase et al.   GENES TO CELLS

A Multigenic Network of ARGONAUTE4 Clade Members Controls Early Megaspore Formation in Arabidopsis

(2016) E. Hernandez-Lagana et al.   GENETICS

Major Chromosomal Rearrangements Distinguish Willow and Poplar After the Ancestral “Salicoid” Genome Duplication

(2016) Jing Hou et al.   Genome Biology and Evolution

BRR2a Affects Flowering Time via FLC Splicing

(2016) Walid Mahrez et al.   PLoS Genetics

NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T

(2016) Chamindika L. Siriwardana et al.   PLoS Genetics

Electrical Capacitance as a Predictor of Root Dry Weight in Shrub Willow (Salix; Salicaceae) Parents and Progeny

(2016) Craig H. Carlson et al.   Applications in Plant Sciences

Confirmation of Single-Locus Sex Determination and Female Heterogamety in Willow Based on Linkage Analysis

(2016) Yingnan Chen et al.   PLoS One

What causes female bias in the secondary sex ratios of the dioecious woody shrub Salix sitchensis colonizing a primary successional landscape?

(2015) Christian Che-Castaldo et al.   AMERICAN JOURNAL OF BOTANY

Expression patterns of inflorescence- and sex-specific transcripts in male and female inflorescences of African oil palm (Elaeis guineensis)

(2015) H. Ho et al.   ANNALS OF APPLIED BIOLOGY

Single locus sex determination and female heterogamety in the basket willow (Salix viminalis L.)

(2015) P Pucholt et al.   HEREDITY

Recent Y chromosome divergence despite ancient origin of dioecy in poplars (Populus)

(2015) A. Geraldes et al.   MOLECULAR ECOLOGY

The fasciclin-like arabinogalactan protein family ofEucalyptus grandiscontains members that impact wood biology and biomechanics

(2015) Colleen P. MacMillan et al.   NEW PHYTOLOGIST

Comparative interrogation of the developing xylem transcriptomes of two wood-forming species:Populus trichocarpaandEucalyptus grandis

(2015) Charles A. Hefer et al.   NEW PHYTOLOGIST

Untapped Potential: Opportunities and Challenges for Sustainable Bioenergy Production from Marginal Lands in the Northeast USA

(2014) Cathelijne R. Stoof et al.   BioEnergy Research

Early selection of novel triploid hybrids of shrub willow with improved biomass yield relative to diploids

(2014) Michelle J Serapiglia et al.   BMC PLANT BIOLOGY

Genome-Wide Disruption of Gene Expression in Allopolyploids but Not Hybrids of Rice Subspecies

(2014) Chunming Xu et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Y-chromosome-encoded small RNA acts as a sex determinant in persimmons

(2014) T. Akagi et al.   SCIENCE

Global RNA sequencing reveals that genotype-dependent allele-specific expression contributes to differential expression in rice F1 hybrids

(2013) Gaoyuan Song et al.   BMC PLANT BIOLOGY

CmCGG Methylation-Independent Parent-of-Origin Effects on Genome-Wide Transcript Levels in Isogenic Reciprocal F1 Triploid Plants

(2013) M. T. A. Donoghue et al.   DNA RESEARCH

Sex-Specific Effects of Cis-Regulatory Variants in Drosophila melanogaster

(2013) J. D. Coolon et al.   GENETICS

RNA-Seq Analysis of Allele-Specific Expression, Hybrid Effects, and Regulatory Divergence in Hybrids Compared with Their Parents from Natural Populations

(2013) Graeme D.M. Bell et al.   Genome Biology and Evolution

The roles of cis- and trans-regulation in the evolution of regulatory incompatibilities and sexually dimorphic gene expression

(2013) C. D. Meiklejohn et al.   GENOME RESEARCH

The evolutionary causes and consequences of sex-biased gene expression

(2013) John Parsch et al.   NATURE REVIEWS GENETICS

Sexual dimorphic floral development in dioecious plants revealed by transcriptome, phytohormone, and DNA methylation analysis in Populus tomentosa

(2013) Yuepeng Song et al.   PLANT MOLECULAR BIOLOGY

 -Galactosyl Yariv Reagent Binds to the  -1,3-Galactan of Arabinogalactan Proteins

(2013) K. Kitazawa et al.   PLANT PHYSIOLOGY

Transcriptome Analysis of the Differentially Expressed Genes in the Male and Female Shrub Willows (Salix suchowensis)

(2013) Jingjing Liu et al.   PLoS One

Intra-Specific Regulatory Variation in Drosophila pseudoobscura

(2013) Anton Suvorov et al.   PLoS One

Genetic strategies for dissecting complex traits in biomass willows (Salix spp.)

(2013) S. J. Hanley et al.   TREE PHYSIOLOGY

TCP transcription factors interact with AS2 in the repression of class-I KNOX genes in Arabidopsis thaliana

(2012) Ziyu Li et al.   PLANT JOURNAL

The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis

(2012) Gerald A. Tuskan et al.   Tree Genetics & Genomes

Cis- and trans-regulatory divergence between progenitor species determines gene-expression novelty in Arabidopsis allopolyploids

(2012) Xiaoli Shi et al.   Nature Communications

Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thaliana seeds

(2011) Peter C McKeown et al.   BMC PLANT BIOLOGY

Differential expression of genes encoding phosphate transporters contributes to arsenic tolerance and accumulation in shrub willow (Salix spp.)

(2011) Emily E. Puckett et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus

(2011) E. Rodgers-Melnick et al.   GENOME RESEARCH

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Brassinosteroid control of sex determination in maize

(2011) T. Hartwig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correlations of expression of cell wall biosynthesis genes with variation in biomass composition in shrub willow (Salix spp.) biomass crops

(2011) Michelle J. Serapiglia et al.   Tree Genetics & Genomes

High-density linkage mapping and evolution of paralogs and orthologs in Salix and Populus

(2010) Sofia Berlin et al.   BMC GENOMICS

Quantifying Whole Transcriptome Size, a Prerequisite for Understanding Transcriptome Evolution Across Species: An Example from a Plant Allopolyploid

(2010) Jeremy E. Coate et al.   Genome Biology and Evolution

Regulatory divergence in Drosophila revealed by mRNA-seq

(2010) C. J. McManus et al.   GENOME RESEARCH

Ribosomal Protein S3, a New Substrate of Akt, Serves as a Signal Mediator between Neuronal Apoptosis and DNA Repair

(2010) Sang Bae Lee et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

TCP Transcription Factors Regulate the Activities of ASYMMETRIC LEAVES1 and miR164, as Well as the Auxin Response, during Differentiation of Leaves in Arabidopsis

(2010) T. Koyama et al.   PLANT CELL

Fasciclin-like arabinogalactan proteins: specialization for stem biomechanics and cell wall architecture in Arabidopsis and Eucalyptus

(2010) Colleen P. MacMillan et al.   PLANT JOURNAL

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Quantitative Genetics of Traits Indicative of Biomass Production and Heterosis in 34 Full-sib F1 Salix eriocephala Families

(2008) Kimberly D. Cameron et al.   BioEnergy Research

Independent Effects of cis- and trans-regulatory Variation on Gene Expression in Drosophila melanogaster

(2008) P. J. Wittkopp et al.   GENETICS

Genome structure and emerging evidence of an incipient sex chromosome in Populus

(2008) T. Yin et al.   GENOME RESEARCH

Regulatory changes underlying expression differences within and between Drosophila species

(2008) Patricia J Wittkopp et al.   NATURE GENETICS